SMAP specifications

Information


Unique identifier OMICS_09150
Name Streamlined Methylation Analysis Pipeline
Alternative name SMAPdigger
Software type Pipeline/Workflow
Interface Command line interface, Graphical user interface
Restrictions to use None
Input data Bis-seq or RRBS data, and a user-defined configuration file that includes all settings of the pipeline.
Input format FASTQ
Output data Tab-delimited text, VCF, images
Operating system Unix/Linux
Programming languages Java, Perl, R
License GNU General Public License version 2.0
Computer skills Advanced
Stability Stable
Maintained Yes

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Maintainers


  • person_outline Kari D. Sørensen <>
  • person_outline Torben Orntoft <>
  • person_outline Lars Bolund <>
  • person_outline Dan Zou <>

SMAP article

SMAP institution(s)
Department of Molecular Medicine, Aarhus University Hospital, Aarhus, Denmark; BGI Co Ltd, Shenzhen, China; School of Computer Science, National University of Defense Technology, Changsha, China; Shenzhen Second People’s Hospital, the First Affiliated Hospital of Shenzhen University, Shenzhen, China; Department of Biomedicine, Aarhus University, Aarhus, Denmark; Department of Computer Science, City University of Hong Kong, Hong Kong, China; Electronic Engineering College, Naval Engineering University, Wuhan, China; Genomic Biology Laboratory, QIMR Berghofer Medical Research Institute, Brisbane, Australia
SMAP funding source(s)
Supported by the Danish Strategic Research Council, Danish Cancer Society, and the Natural Science Foundation of China under grant number 61202127 and the Doctoral Fund of Ministry of Education of China under grant number 60911062.

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