SMAP specifications

Unique identifier:
OMICS_09150
Alternative name:
SMAPdigger
Interface:
Command line interface, Graphical user interface
Input data:
Bis-seq or RRBS data, and a user-defined configuration file that includes all settings of the pipeline.
Output data:
Tab-delimited text, VCF, images
Programming languages:
Java, Perl, R
Computer skills:
Advanced
Maintained:
Yes
Name:
Streamlined Methylation Analysis Pipeline
Software type:
Pipeline/Workflow
Restrictions to use:
None
Input format:
FASTQ
Operating system:
Unix/Linux
License:
GNU General Public License version 2.0
Stability:
Stable

versioning

tutorial arrow
×
Upload and version your source code
Get a DOI for each update to improve tool traceability. Archive your releases so the community can easily visualize progress on your work.
Facilitate your tool traceability
Sign up for free to upload your code and get a DOI

No versioning.

SMAP distribution

download

SMAP support

Maintainers

  • Kari D. Sørensen <>
  • Torben Orntoft <>
  • Lars Bolund <>
  • Dan Zou <>

forum

tutorial arrow
×
Communicate with other users
Participate in the forum to get support for using tools. Ask questions about technical specifications.
Take part in the discussion
Sign up for free to ask question and share your advices

No open topic.

Credits

tutorial arrow
×
Promote your skills
Define all the tasks you managed and assign your profile the appropriate badges. Become an active member.
Promote your work
Sign up for free to badge your contributorship

Publications

Institution(s)

Department of Molecular Medicine, Aarhus University Hospital, Aarhus, Denmark; BGI Co Ltd, Shenzhen, China; School of Computer Science, National University of Defense Technology, Changsha, China; Shenzhen Second People’s Hospital, the First Affiliated Hospital of Shenzhen University, Shenzhen, China; Department of Biomedicine, Aarhus University, Aarhus, Denmark; Department of Computer Science, City University of Hong Kong, Hong Kong, China; Electronic Engineering College, Naval Engineering University, Wuhan, China; Genomic Biology Laboratory, QIMR Berghofer Medical Research Institute, Brisbane, Australia

Funding source(s)

Supported by the Danish Strategic Research Council, Danish Cancer Society, and the Natural Science Foundation of China under grant number 61202127 and the Doctoral Fund of Ministry of Education of China under grant number 60911062.

User review

tutorial arrow
×
Vote up tools and offer feedback
Give value to tools and make your expertise visible
Give your feedback on this tool
Sign up for free to join and share with the community

0 user reviews

star_border star_border star_border star_border star_border
star star star star star

0 user reviews

star_border star_border star_border star_border star_border
star star star star star

No review has been posted.

Related Tools