STRetch specifications

Information


Unique identifier OMICS_31463
Name STRetch
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Output data A file for each sample that contains all STR loci for which STR decoy reads were detected.
Output format TSV
Operating system Unix/Linux
Programming languages Groovy, Python, R, Shell (Bash)
License MIT License
Computer skills Advanced
Stability Stable
Maintained Yes

Download


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Versioning


No version available

Documentation


Maintainer


  • person_outline Alicia Oshlack

Additional information


https://github.com/Oshlack/STRetch/wiki

Publication for STRetch

STRetch institution(s)
Murdoch Children’s Research Institute, Royal Children’s Hospital, Parkville, VIC, Australia; School of Biosciences, The University of Melbourne, Parkville, VIC, Australia; Analytic and Translational Genetics Unit, Massachusetts General Hospital, Boston, MA, USA; Program in Medical and Population Genetics, Broad Institute of MIT and Harvard, Cambridge, MA, USA; Florey Institute of Neuroscience and Mental Health, University of Melbourne, Parkville, VIC, Australia; Department of Diagnostic Genomics, PathWest Laboratory Medicine, QEII Medical Centre, Nedlands, WA, Australia; Neurogenetic Unit, Royal Perth Hospital, Perth, WA, Australia; Harry Perkins Institute of Medical Research, Centre for Medical Research, University of Western Australia, Nedlands, WA, Australia
STRetch funding source(s)
Supported by an Australian Government Research Training Program (RTP) Scholarship, a Murdoch Children’s Research Institute Top Up Scholarship, and an Australian Genomics Health Alliance PhD Award, funded by NHMRC (GNT1113531); an NHMRC Fellowship APP1117510, NHMRC Project Grant APP1080587, and EU Collaborative Grant APP1055295; a National Health and Medical Research Council, Career Development Fellowship GNT1126157, partly by the National Human Genome Research Institute, the National Eye Institute, and the National Heart, Lung and Blood Institute grant UM1 HG008900.

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