STRScan statistics

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Citations per year

Number of citations per year for the bioinformatics software tool STRScan
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STRScan specifications

Information


Unique identifier OMICS_22073
Name STRScan
Alternative name Short tandem repeats scan
Software type Application/Script
Interface Command line interface
Restrictions to use None
Input data A set of short tandem repeats patterns.
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

Taxon


  • Primates
    • Homo sapiens

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Versioning


No version available

Maintainer


  • person_outline Haixu Tang

Additional information


http://darwin.informatics.indiana.edu/str/detectedstrs.html

Publication for Short tandem repeats scan

STRScan citation

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The International Conference on Intelligent Biology and Medicine (ICIBM) 2016: from big data to big analytical tools

2017
BMC Bioinformatics
PMCID: 5629550
PMID: 28984189
DOI: 10.1186/s12859-017-1797-3

[…] e not been previously implicated as essential oncogenes in the literature and could be novel targets on treating complex diseases and cancers.In the next paper, Tang et al. [] developed a new method, STRScan, that quantifies short tandem repeats (STRs) from whole-genome sequencing data. STRscan identifies k-mers from short NGS reads that are similar to input STR patterns. The authors then used a g […]


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STRScan institution(s)
School of Informatics and Computing, Indiana University, Bloomington, IN, USA.
STRScan funding source(s)
Supported by National Science Foundation (Grant no: DBI-1262588).

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