STRUCLA specifications

Information


Unique identifier OMICS_34432
Name STRUCLA
Alternative name STRUcture CLAssification
Interface Web user interface
Restrictions to use None
Input data A multiple protein structure file.
Input format PDB
Output data A set of distance matrices and the set of unrooted trees.
Output format PHYLIP, NEXUS
Computer skills Basic
Stability Stable
Maintained Yes

Maintainers


  • person_outline Janusz Bujnicki
  • person_outline Joanna Sasin

Publication for STRUcture CLAssification

STRUCLA citation

library_books

Structural and evolutionary bioinformatics of the SPOUT superfamily of methyltransferases

2007
BMC Bioinformatics
PMCID: 1829167
PMID: 17338813
DOI: 10.1186/1471-2105-8-73

[…] ] or by combination of sequence and structure data. Initially, we attempted to infer a tree for representative SPOUT structures using several methods for calculation of 'structural' distances via the STRUCLA server []. However, the resulting trees were even less robust than those based solely on sequence and no meaningful consensus could be derived (data not shown). Thus, we sought to determine th […]

STRUCLA institution(s)
Bioinformatics Laboratory, International Institute of Molecular and Cell Biology, Warsaw, Poland
STRUCLA funding source(s)
Supported by KBN (grant 3P04A01124) and an EMBO/HHMI Young Investigator and a fellow of Foundation for Polish Science.

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