Structator statistics

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Structator specifications

Information


Unique identifier OMICS_08372
Name Structator
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS
License GNU General Public License version 2.0
Computer skills Advanced
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Michael Beckstette <>

Publication for Structator

Structator in publications

 (2)
PMCID: 5712110
PMID: 29197323
DOI: 10.1186/s12864-017-4309-y

[…] by refinement of the clusters using structural alignment. rnasscclust [] extends graphclust to include information from multiple sequences when multiple alignments of rnas are used as input. structator [] uses affix arrays to map known rna structures to the genome very fast., unfortunately, most of the methods stated above either focus on the folding of known rna genes and not on finding […]

PMCID: 3441527
PMID: 23028655
DOI: 10.1371/journal.pone.0044878

[…] rssps describing 42 highly structured families (all families with a consensus secondary structure containing at least 5 stem-loop substructures) from rfam10 database, compiled by the authors of the structator software ., the frequencies of short oligonucleotides and motifs, represented as position weights specific matrices (1314 pwms extracted from jaspar database) were calculated using […]


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Structator institution(s)
Center for Bioinformatics, University of Hamburg, Hamburg, Germany

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