Main logo
?
tutorial arrow
×
Submit new tools
Share tools covering the current topic. Provide easy-to-follow guidelines to improve their usability.
Share new tools with the community
Sign up for free to promote the availability of bioinformatics tools

Structural domain detection software tools | Protein data analysis

Protein structures are comprised of modular elements known as domains. These units are used and re-used over and over in nature, and usually serve some particular function in the structure. Thus it is useful to be able to break up a protein of…
Gene3D
Dataset

Gene3D

A database of protein domain structure annotations for protein sequences.…

A database of protein domain structure annotations for protein sequences. Domains are predicted using a library of profile HMMs from 2737 CATH superfamilies. The current Gene3D (v14) release has…

PAT
Web
Desktop

PAT Predictor for Antibody Target

An integrated computational framework to predict optimal structural domains and…

An integrated computational framework to predict optimal structural domains and identify target molecules for antibodies. PAT automatically analyses various structural properties, evaluates the…

DomainParser
Web

DomainParser

A computer program using network flow algorithms for protein domain…

A computer program using network flow algorithms for protein domain decomposition. DomainParser partitions a protein structure into domains. Through utilization of various types of structural…

CA algorithm
Algorithm

CA algorithm

A clustering-based approach to domain identification, which works equally well…

A clustering-based approach to domain identification, which works equally well on individual chains or entire complexes. The method is simple and fast, taking only a few milliseconds to run, and…

PDP
Desktop

PDP Protein Domain Parser

A program for automatic identification of domains in protein three-dimensional…

A program for automatic identification of domains in protein three-dimensional structures. PDP performance was assessed by three different benchmarks: (i) by comparison with the expert-curated SCOP…

Information

By using OMICtools you acknowledge that you have read and accepted the terms of the end user license agreement.