SVPV specifications

Unique identifier:
OMICS_16458
Software type:
Package/Module
Restrictions to use:
None
Output data:
A set of structural variant regions.
Operating system:
Unix/Linux
License:
MIT License
Stability:
Stable
Maintained:
Yes
Name:
Structural Variant Prediction Viewer
Interface:
Command line interface
Input data:
A set alignment files (SAM/BAM/CRAM format), a set of structural variant predictions on these alignments (VCF files).
Output format:
PDF
Programming languages:
R
Computer skills:
Advanced
Requirements:
Numpy, SAMtools, BCFtools, X11, tkinter

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SVPV distribution

download

SVPV support

Documentation

Maintainer

  • Eleni Giannoulatou <>

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Publications

Institution(s)

Victor Chang Cardiac Research Institute, Sydney, Australia; St Vincent’s Clinical School, University of New South Wales, Sydney, Australia; School of Biotechnology and Biomolecular Sciences, University of New South Wales, Sydney, Australia

Funding source(s)

This work has been supported by the Chain Reaction (The Ultimate Corporate Bike Challenge), the Office of Health and Medical Research NSW State Government, and by a NHMRC Senior Research Fellowship (1042002).

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