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Structure orientation software tools | Bioimaging

Orientation and the degree of isotropy are important in many biological systems such as the sarcomeres of cardiomyocytes and other fibrillar structures of the cytoskeleton. Image based analysis of such structures is often limited to qualitative…
FibrilTool
Desktop

FibrilTool

An ImageJ plug-in based on the concept of nematic tensor, which can provide a…

An ImageJ plug-in based on the concept of nematic tensor, which can provide a quantitative description of the anisotropy of fiber arrays and their average orientation in cells, directly from raw…

CytoSpectre
Desktop

CytoSpectre

An automated tool based on spectral analysis, allowing the quantification of…

An automated tool based on spectral analysis, allowing the quantification of orientation and also size distributions of structures in microscopy images. CytoSpectre utilizes the Fourier transform to…

OrientationJ
Desktop

OrientationJ

Characterizes the orientation and isotropy properties of a region of interest…

Characterizes the orientation and isotropy properties of a region of interest (ROI) in an image, based on the evaluation of the structure tensor in a local neighborhood. The software OrientationJ…

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