STS specifications

Information


Unique identifier OMICS_18944
Name STS
Alternative name Sequential Tree Sampler
Software type Application/Script
Interface Command line interface
Restrictions to use None
Input data A fasta file and tree file in nexus format. The fasta file must contain an alignment with a superset of the taxa in the tree file.
Input format FASTA, NEXUS
Operating system Unix/Linux
Computer skills Advanced
Version 0.1
Stability Alpha
Requirements smctc, lcfit, Bio++, cmake, gsl, nlopt, beagle, google test
Source code URL https://codeload.github.com/OnlinePhylo/sts/tar.gz/v0.1
Maintained Yes

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Maintainer


  • person_outline Mathieu Fourment <>

Publication for Sequential Tree Sampler

STS institution(s)
ithree institute, University of Technology Sydney, Ultimo, NSW, Australia; Fred Hutchinson Cancer Research Center, Seattle, WA, USA
STS funding source(s)
Supported by National Science Foundation grants DMS-1223057, CISE-1564137, National Institutes of Health grant U54-GM111274, a Faculty Scholar grant from the Howard Hughes Medical Institute and the Simons Foundation.

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