SUBA3 statistics

info info

Citations per year


Tool usage distribution map

info info

Associated diseases


Popular tool citations

chevron_left Subcellular localization databases chevron_right
Want to access the full stats & trends on this tool?


SUBA3 specifications


Unique identifier OMICS_02987
Name SUBA3
Alternative name SUBcellular localisation database for Arabidopsis proteins
Restrictions to use None
Database management system MySQL
Community driven No
Data access File download, Browse
User data submission Allowed
Version 4.0
Content license CC Attribution
Maintained Yes


  • Plants and Fungi
    • Arabidopsis thaliana


Publications for SUBcellular localisation database for Arabidopsis proteins

SUBA3 citations


Classification and phylogenetic analyses of the Arabidopsis and tomato G type lectin receptor kinases

BMC Genomics
PMCID: 5889549
PMID: 29625550
DOI: 10.1186/s12864-018-4606-0

[…] llowed by chromosome 4 (eight members), chromosome 5 (three members), chromosome 2 (two members) and chromosome 3 (one member) (Additional file ).Arabidopsis G-LecRKs localization was predicted using SUBA3 [, ]. This tool predicted all Arabidopsis proteins to be localized at the plasma membrane, consistent with the existence of a TM domain. SUBA predictions were further investigated with TargetP 1 […]


Nictaba Homologs from Arabidopsis thaliana Are Involved in Plant Stress Responses

Front Plant Sci
PMCID: 5767604
PMID: 29375596
DOI: 10.3389/fpls.2017.02218

[…] nts were obtained using EMBOSS Water. Prediction of the presence of a signal peptide was conducted using Phobius and SignalP 4.1 (; ), whereas the presence of a NLS was predicted by NucPred (). Using SUBA3, protein subcellular localization was predicted (). BLASTn and tBLASTn searches against the expressed sequence tag (EST) database were performed using the NCBI website. Using the eFP browser () […]


Highly Efficient Single Step Enrichment of Low Abundance Phosphopeptides from Plant Membrane Preparations

Front Plant Sci
PMCID: 5632542
PMID: 29042862
DOI: 10.3389/fpls.2017.01673
call_split See protocol

[…] Bioinformatics analysis was performed with Perseus, Microsoft Excel, SigmaPlot. Annotations were extracted from MapMan (), subcellular locations were obtained from SUBA3 (). […]


Global Analysis of Membrane associated Protein Oligomerization Using Protein Correlation Profiling*

PMCID: 5672003
PMID: 28887381
DOI: 10.1074/mcp.RA117.000276

[…] aracterized in previous work on the oligomerization state of soluble proteins in the cytosol () or chloroplast () (B). Based on the current subcellular localization predictions from SUBAcon (Version: SUBA3) (), our proteomic data set included many uncharacterized cytosolic, chloroplast, and mitochondrial proteins. The largest enrichment was in endomembrane-localized proteins, with 65% analyzed for […]


The pentatricopeptide repeat protein MTSF2 stabilizes a nad1 precursor transcript and defines the 3΄ end of its 5΄ half intron

Nucleic Acids Res
PMCID: 5449624
PMID: 28334831
DOI: 10.1093/nar/gkx162

[…] r 3 months (Figure ). Additionally, mtsf2 plants showed deformed and dark green rosette leaves and were late flowering but remained fertile (Figure ).The Arabidopsis subcellular database SUBA ( strongly supported the mitochondrial localization of the MTSF2 protein. To verify the cellular distribution of MTSF2, a GFP translational fusion comprising the complete […]


Skewing in Arabidopsis roots involves disparate environmental signaling pathways

BMC Plant Biol
PMCID: 5286820
PMID: 28143395
DOI: 10.1186/s12870-017-0975-9

[…] obable skew gene candidates (HPSGC).The 11 HPSGC are involved in many different processes and were subjected to a thorough literature and expression map search using many available databases, such as Suba3, TAIR, and the Arabidopsis eFP browser [–]. These genes were searched with the goal of finding associations with cell expansion, division, auxin transport, or any process involved with root trop […]

Want to access the full list of citations?
SUBA3 institution(s)
ARC Centre of Excellence in Plant Energy Biology, The University of Western Australia, Perth, WA, Australia; Department of Genetics and Physiology, Biocenter Oulu, University of Oulu, Finland
SUBA3 funding source(s)
ARC Centre of Excellence in Plant Energy Biology (CE140100008)

SUBA3 reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review SUBA3