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Protein subcellular localization databases | Sequence analysis

SUBA3
Dataset

SUBA3 SUBcellular localisation database for Arabidopsis proteins

Provides manually curated published data sets of large-scale subcellular…

Provides manually curated published data sets of large-scale subcellular proteomics, fluorescent protein visualization, protein-protein interaction (PPI) as well as subcellular targeting calls from…

NLSdb
Dataset

NLSdb

Department of Informatics, I12-Chair of Bioinformatics and Computational…

Department of Informatics, I12-Chair of Bioinformatics and Computational Biology, Technical University of Munich (TUM), Garching/Munich, Germany; School of Chemistry and Molecular Biosciences, The…

Prolocate
Dataset

Prolocate

Provides subcellular localization data for over 6000 rat liver proteins.…

Provides subcellular localization data for over 6000 rat liver proteins. Prolocate offers the ability to query subcellular distribution of individual proteins and examine underlying data, compile…

FunSecKB
Dataset

FunSecKB Fungal Secretome KnowledgeBase

An improved and updated version of the fungal secretome and subcellular…

An improved and updated version of the fungal secretome and subcellular proteome, i. e. protein subcellular location, knowledgebase. The fungal protein sequence data were retrieved from UniProtKB,…

PSORTdb
Dataset

PSORTdb

A web-accessible database of protein subcellular localization (SCL) for…

A web-accessible database of protein subcellular localization (SCL) for bacteria that contains both information determined through laboratory experimentation and computational predictions. The…

NMP-db
Dataset

NMP-db

Holds information about the protein names, their organism and the cell-type.…

Holds information about the protein names, their organism and the cell-type. NMP-db provides a database with proteins associated to the nuclear matrix. This database can be accessed from a…

cropPAL
Dataset

cropPAL crop Proteins with Annotated Locations

Collates more than 550 data sets from previously published fluorescent tagging…

Collates more than 550 data sets from previously published fluorescent tagging or mass spectrometry studies and eight pre-computed subcellular predictions for barley, wheat, rice and maize proteomes.…

CauloBrowser
Dataset

CauloBrowser

An online resource for Caulobacter studies. CauloBrowser provides a…

An online resource for Caulobacter studies. CauloBrowser provides a user-friendly interface for quickly searching genes of interest and downloading genome-wide results. Search results about…

LEGER
Dataset

LEGER

Supports functional Listeria genome analyses by combining information obtained…

Supports functional Listeria genome analyses by combining information obtained by applying bioinformatics methods and from public databases to improve the original annotations. LEGER offers three…

MiCroKiTS
Dataset

MiCroKiTS Midbody, Centrosome, Kinetochore, Telomere and Spindle

A database for proteins temporally and spatially localized in distinct…

A database for proteins temporally and spatially localized in distinct subcellular positions including midbody, centrosome, kinetochore, telomere and mitotic spindle during cell division/mitosis.…

ComPPI
Dataset

ComPPI Compartmentalized Protein-Protein Interaction Database

A cellular compartment-specific database of proteins and their interactions…

A cellular compartment-specific database of proteins and their interactions enabling an extensive, compartmentalized protein-protein interaction network analysis. ComPPI enables the user to filter…

Chloroplast…
Dataset

Chloroplast Function Database

Provides access to information on tagged lines for nuclear-encoded chloroplast…

Provides access to information on tagged lines for nuclear-encoded chloroplast proteins, including their phenotypes and genotypes. The Chloroplast Function Database is a publicly available web-based…

CoBaltDB
Dataset

CoBaltDB

A comprehensive database that gathers all prediction outputs concerning…

A comprehensive database that gathers all prediction outputs concerning complete prokaryotic proteomes. CoBaltDB is a powerful platform that provides easy access to the results of multiple…

Maize Cell…
Dataset

Maize Cell Genomics Database

A public database, developed to organize a large data set of confocal images…

A public database, developed to organize a large data set of confocal images generated from the maize marker lines, for studying native gene expression in specific cell types and subcellular…

DBSubLoc
Dataset

DBSubLoc Database of Protein Subcellular Localization

A database of protein subcellular localization. This database contains proteins…

A database of protein subcellular localization. This database contains proteins from primary protein database SWISS-PROT and PIR. By collecting the subcellular localization annotation, these…

eSLDB
Dataset

eSLDB eukaryotic Subcellular Localization DataBase

A database of protein subcellular localization annotation for eukaryotic…

A database of protein subcellular localization annotation for eukaryotic organisms.

LOCATE
Dataset

LOCATE

A curated database that houses data describing the membrane organization and…

A curated database that houses data describing the membrane organization and subcellular localization of proteins from the RIKEN FANTOM4 mouse and human protein sequence set.

LocDB
Dataset

LocDB

An expert curated database that collects experimental annotations for the…

An expert curated database that collects experimental annotations for the subcellular localization of proteins in Human (Homo sapiens) and Weed (Arabidopsis thaliana).

STEPdb
Dataset

STEPdb STEP database

Contains a comprehensive characterization of subcellular localization and…

Contains a comprehensive characterization of subcellular localization and topology of the complete proteome of Escherichia coli. Two widely used E. coli proteomes (K-12 and BL21) are presented…

Human…
Dataset

Human Proteinpedia

A community portal for sharing and integration of human protein data. It allows…

A community portal for sharing and integration of human protein data. It allows research laboratories to contribute and maintain protein annotations. Human Protein Reference Database (HPRD)…

MetazSecKB
Dataset

MetazSecKB

A secretome and subcellular proteome knowledgebase specifically designed for…

A secretome and subcellular proteome knowledgebase specifically designed for metazoan, i.e. human and animals. The protein sequence data, consisting of over 4 million entries with 121 species having…

LocSigDB
Dataset

LocSigDB

A manually curated database of experimental protein localization signals for…

A manually curated database of experimental protein localization signals for eight distinct subcellular locations; primarily in a eukaryotic cell with brief coverage of bacterial proteins. From…

PlantSecKB
Dataset

PlantSecKB Plant Secretome and Subcellular Proteome KnowledgeBase

A database for the plant research community to access and curate plant protein…

A database for the plant research community to access and curate plant protein subcellular locations, with a focus on secreted proteins. PlantSecKB is constructed with all the available plant protein…

COMPARTMENTS
Dataset

COMPARTMENTS

An automatically updated web resource to be able to provide up-to-date…

An automatically updated web resource to be able to provide up-to-date information on the subcellular localization of proteins from the major eukaryotic model organisms.

LocateP
Dataset

LocateP

Combines many of the existing high-precision protein subcellular-location (SCL)…

Combines many of the existing high-precision protein subcellular-location (SCL) identifiers with our own developed identifiers for specific SCLs. The LocateP pipeline was designed such that it mimics…

3DPL
Dataset

3DPL 3-Dimensional Protein Localization

Offers user a list of each protein's spacio-temporal localization images.…

Offers user a list of each protein's spacio-temporal localization images. 3DPL provides different types of information such as developmental stage, experimental condition, cellular localization…

ER-GolgiDB
Dataset

ER-GolgiDB

Offers a database of predictions for Endoplasmic Reticulum (ER) and Golgi…

Offers a database of predictions for Endoplasmic Reticulum (ER) and Golgi Apparatus localization. ER-GolgiDB is a comprehensive source of information based on sequence homology to experimentally…

ProtSecKB
Dataset

ProtSecKB

A knowledgebase for protist secretomes as well as protist proteins located in…

A knowledgebase for protist secretomes as well as protist proteins located in other subcellular locations. Protein sequences are obtained from UniProtKB. Subcellular locations are identified using…

PathLocdb
Dataset

PathLocdb Pathway Localization database

Enables biochemical researchers to quickly access summarized subcellular…

Enables biochemical researchers to quickly access summarized subcellular localization of pathways from UniProt and KEGG pathway databases. As the first effort to systematically integrate pathway…

DBMLoc
Dataset

DBMLoc

A specific database aimed at multiple localization annotated proteins. Proteins…

A specific database aimed at multiple localization annotated proteins. Proteins are cross-referenced to NCBI taxonomy, Gene Ontology and original database. Proteins that interact with each other tend…

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