Provides manually curated published data sets of large-scale subcellular…
Provides manually curated published data sets of large-scale subcellular proteomics, fluorescent protein visualization, protein-protein interaction (PPI) as well as subcellular targeting calls from…
Provides subcellular localization data for over 6000 rat liver proteins.…
Provides subcellular localization data for over 6000 rat liver proteins. Prolocate offers the ability to query subcellular distribution of individual proteins and examine underlying data, compile…
An improved and updated version of the fungal secretome and subcellular…
An improved and updated version of the fungal secretome and subcellular proteome, i. e. protein subcellular location, knowledgebase. The fungal protein sequence data were retrieved from UniProtKB,…
Offers a database that regards nuclear localization signals (NLSs) and proteins…
Offers a database that regards nuclear localization signals (NLSs) and proteins translocated into the nucleus by signal sequences. NLSdb is a comprehensive source of information that can be easily…
A web-accessible database of protein subcellular localization (SCL) for…
A web-accessible database of protein subcellular localization (SCL) for bacteria that contains both information determined through laboratory experimentation and computational predictions. The…
Holds information about the protein names, their organism and the cell-type.…
Holds information about the protein names, their organism and the cell-type. NMP-db provides a database with proteins associated to the nuclear matrix. This database can be accessed from a…
Collates more than 550 data sets from previously published fluorescent tagging…
Collates more than 550 data sets from previously published fluorescent tagging or mass spectrometry studies and eight pre-computed subcellular predictions for barley, wheat, rice and maize proteomes.…
An online resource for Caulobacter studies. CauloBrowser provides a…
An online resource for Caulobacter studies. CauloBrowser provides a user-friendly interface for quickly searching genes of interest and downloading genome-wide results. Search results about…
Supports functional Listeria genome analyses by combining information obtained…
Supports functional Listeria genome analyses by combining information obtained by applying bioinformatics methods and from public databases to improve the original annotations. LEGER offers three…
A database for proteins temporally and spatially localized in distinct…
A database for proteins temporally and spatially localized in distinct subcellular positions including midbody, centrosome, kinetochore, telomere and mitotic spindle during cell division/mitosis.…
A cellular compartment-specific database of proteins and their interactions…
A cellular compartment-specific database of proteins and their interactions enabling an extensive, compartmentalized protein-protein interaction network analysis. ComPPI enables the user to filter…
Provides access to information on tagged lines for nuclear-encoded chloroplast…
Provides access to information on tagged lines for nuclear-encoded chloroplast proteins, including their phenotypes and genotypes. The Chloroplast Function Database is a publicly available web-based…
A comprehensive database that gathers all prediction outputs concerning…
A comprehensive database that gathers all prediction outputs concerning complete prokaryotic proteomes. CoBaltDB is a powerful platform that provides easy access to the results of multiple…
A public database, developed to organize a large data set of confocal images…
A public database, developed to organize a large data set of confocal images generated from the maize marker lines, for studying native gene expression in specific cell types and subcellular…
A database of protein subcellular localization. This database contains proteins…
A database of protein subcellular localization. This database contains proteins from primary protein database SWISS-PROT and PIR. By collecting the subcellular localization annotation, these…
A database of protein subcellular localization annotation for eukaryotic…
A database of protein subcellular localization annotation for eukaryotic organisms.
A curated database that houses data describing the membrane organization and…
A curated database that houses data describing the membrane organization and subcellular localization of proteins from the RIKEN FANTOM4 mouse and human protein sequence set.
An expert curated database that collects experimental annotations for the…
An expert curated database that collects experimental annotations for the subcellular localization of proteins in Human (Homo sapiens) and Weed (Arabidopsis thaliana).
Contains a comprehensive characterization of subcellular localization and…
Contains a comprehensive characterization of subcellular localization and topology of the complete proteome of Escherichia coli. Two widely used E. coli proteomes (K-12 and BL21) are presented…
A community portal for sharing and integration of human protein data. It allows…
A community portal for sharing and integration of human protein data. It allows research laboratories to contribute and maintain protein annotations. Human Protein Reference Database (HPRD)…
A secretome and subcellular proteome knowledgebase specifically designed for…
A secretome and subcellular proteome knowledgebase specifically designed for metazoan, i.e. human and animals. The protein sequence data, consisting of over 4 million entries with 121 species having…
A manually curated database of experimental protein localization signals for…
A manually curated database of experimental protein localization signals for eight distinct subcellular locations; primarily in a eukaryotic cell with brief coverage of bacterial proteins. From…
A database for the plant research community to access and curate plant protein…
A database for the plant research community to access and curate plant protein subcellular locations, with a focus on secreted proteins. PlantSecKB is constructed with all the available plant protein…
An automatically updated web resource to be able to provide up-to-date…
An automatically updated web resource to be able to provide up-to-date information on the subcellular localization of proteins from the major eukaryotic model organisms.
Combines many of the existing high-precision protein subcellular-location (SCL)…
Combines many of the existing high-precision protein subcellular-location (SCL) identifiers with our own developed identifiers for specific SCLs. The LocateP pipeline was designed such that it mimics…
Offers a database of predictions for Endoplasmic Reticulum (ER) and Golgi…
Offers a database of predictions for Endoplasmic Reticulum (ER) and Golgi Apparatus localization. ER-GolgiDB is a comprehensive source of information based on sequence homology to experimentally…
A knowledgebase for protist secretomes as well as protist proteins located in…
A knowledgebase for protist secretomes as well as protist proteins located in other subcellular locations. Protein sequences are obtained from UniProtKB. Subcellular locations are identified using…
Enables biochemical researchers to quickly access summarized subcellular…
Enables biochemical researchers to quickly access summarized subcellular localization of pathways from UniProt and KEGG pathway databases. As the first effort to systematically integrate pathway…
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