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Subcellular protein distribution | Bioimaging software tools

Human cells are organized into compartments of different biochemical cellular processes. Having proteins appear at the right time to the correct locations in the cellular compartments is required to conduct their functions in normal cells, whereas…
S-PSorter
Desktop

S-PSorter

A cell structure-driven classifier construction approach for predicting…

A cell structure-driven classifier construction approach for predicting image-based protein subcellular location by employing the prior biological structural information. We evaluate S-PSorter on a…

SemiBiomarker
Desktop

SemiBiomarker

A semi-supervised protocol that can use unlabeled cancer protein data in model…

A semi-supervised protocol that can use unlabeled cancer protein data in model construction by an iterative and incremental training strategy. Experiments demonstrate that the new semi-supervised…

PLAST
Web

PLAST Protein Localization Analysis and Search Tools

An automated analysis framework for constructing and comparing quantitative…

An automated analysis framework for constructing and comparing quantitative signatures of protein subcellular localization images based on microscopy images. PLAST produces human-interpretable…

Automated…
Desktop

Automated Image Analysis of Protein Localization in Budding Yeast

Computational methods were developed to automatically analyze the images…

Computational methods were developed to automatically analyze the images created by the University of California, San Francisco (UCSF) yeast GFP fusion localization project. The automated method…

iLocator
Desktop

iLocator

To reveal the cancer-related protein mislocalizations, an image-based…

To reveal the cancer-related protein mislocalizations, an image-based multi-label subcellular location predictor which covers seven cellular localizations was developed. The iLocator incorporates…

PSLID
Dataset

PSLID Protein Subcellular Location Image Database

It is both a web service providing access to collections of images showing…

It is both a web service providing access to collections of images showing subcellular location patterns and an open-source image database software system. There are two main collections: the…

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