SCHISM specifications


Unique identifier OMICS_16121
Name SubClonal Hierarchy Inference from Somatic Mutations
Software type Framework/Library
Interface Command line interface
Restrictions to use Academic or non-commercial use
Input data A tab-delimited table listing somatic mutation allele specific read counts and integer copy number value, or a tab-delimited list of the estimated value and standard error of cellularity for each somatic mutation in each tumor sample, a tab-delimited file that assigns each somatic mutation to a mutation cluster.
Output data The subclone tree reconstruction.
Operating system Unix/Linux
License Other
Computer skills Advanced
Version 1.1.2
Stability Stable
Requirements Matplotlib, igraph c core, python-igraph, numpy, scipy, PyYAML, sklearn
Source code URL
Maintained Yes



Add your version


  • person_outline Rachel Karchin <>

SCHISM article

SCHISM funding source(s)
This work was supported by funds from National Cancer Institute R01CA179991.

SCHISM reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review SCHISM

Related Tools