SuBliMinaL Toolbox specifications


Unique identifier OMICS_20088
Name SuBliMinaL Toolbox
Software type Application/Script
Interface Command line interface
Restrictions to use Academic or non-commercial use
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java
Computer skills Advanced
Stability Stable
BioCyc Data File Licence
Maintained Yes



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  • person_outline Neil Swainston <>

Publication for SuBliMinaL Toolbox

SuBliMinaL Toolbox in publications

PMCID: 4361730
PMID: 25722247
DOI: 10.1007/s10142-015-0433-4

[…] ()., there are other software platforms that are tailor made for semi-automated gems reconstruction like the raven toolbox (agren et al. ) which has a web-based version (garcia-albornoz et al. ) and subliminal toolbox (swainston et al. ) which can be used for high-throughput gem reconstruction. all mentioned platforms and software were compared in the recent review (hamilton and reed ) […]

PMCID: 3623889
PMID: 23433509
DOI: 10.1186/1752-0509-7-15

[…] of which do not have sbml or biopax writers. besides the graphical focus and missing writers, comparison to those tools is not reasonable because they are not thought to act as kegg converters., the subliminal toolbox [] provides a very interesting alternative for metabolic modeling, based on kegg data. subliminal does not provide kgml conversion and is thus not directly comparable […]

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SuBliMinaL Toolbox institution(s)
Manchester Centre for Integrative Systems Biology, University of Manchester, Manchester, UK; Virginia Bioinformatics Institute, Virginia Tech, Blacksburg, VA, USA
SuBliMinaL Toolbox funding source(s)
Supported by Manchester Centre for Integrative Systems Biology funded by the BBSRC and EPSRC; BBSRC/EPSRC Grant BB/C008219/1.

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