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SubLoc specifications

Information


Unique identifier OMICS_13509
Name SubLoc
Interface Web user interface
Restrictions to use None
Programming languages Perl
Database management system MySQL
Computer skills Basic
Stability No
Maintained No

Maintainer


This tool is not available anymore.

Information


Unique identifier OMICS_13509
Name SubLoc
Software type Package/Module
Interface Command line interface, Graphical user interface
Restrictions to use None
Operating system Unix/Linux, Windows
Programming languages Perl
Computer skills Advanced
Stability No
Maintained No

Versioning


No version available

Maintainer


This tool is not available anymore.

Publication for SubLoc

SubLoc citations

 (61)
library_books

Outer membrane vesicles from Neisseria gonorrhoeae target PorB to mitochondria and induce apoptosis

2018
PLoS Pathog
PMCID: 5877877
PMID: 29601598
DOI: 10.1371/journal.ppat.1006945

[…] ass spectrometric analysis were annotated for subcellular localization using four different available online bacterial protein subcellular localization (SCL) predictor tools, PSORTb version 3.0.2 [], SubLoc v1.0 [], CELLO 2.5 [] and PSLpred []. The predicted subcellular component was assigned based on majority votes. The identified protein was annotated as unknown subcellular localization in a cas […]

library_books

Genome Wide Identification of Cyclic Nucleotide Gated Ion Channel Gene Family in Wheat and Functional Analyses of TaCNGC14 and TaCNGC16

2018
Front Plant Sci
PMCID: 5786745
PMID: 29403523
DOI: 10.3389/fpls.2018.00018

[…] h, isoelectric points (PI), molecular weights, instability index, atomic composition, and amino acid composition were predicted. The subcellular localization of the TaCNGC proteins were identified by subloc v1.0 (Hua and Sun, ) and ProtComp v9.0. […]

library_books

Matrix metalloproteinases operate redundantly in Arabidopsis immunity against necrotrophic and biotrophic fungal pathogens

2017
PLoS One
PMCID: 5568438
PMID: 28832648
DOI: 10.1371/journal.pone.0183577

[…] idge with the cysteine residue in the “cysteine switch” motif, thus may not be operational as was found for NtMMP1 by Mandal et al []. At2-MMP is predicted to be located in the extracellular space by SubLoc and TargetP [–]. However, WoLF PSORT [] prediction suggests that At2-MMP is bound to the plasma membrane. To analyse the location, we constructed a GFP fusion of At2-MMP under control of the 35 […]

library_books

In silico analysis to identify vaccine candidates common to multiple serotypes of Shigella and evaluation of their immunogenicity

2017
PLoS One
PMCID: 5540609
PMID: 28767653
DOI: 10.1371/journal.pone.0180505

[…] tify surface, outer-membrane or secreted proteins using the following localization prediction softwares: PSORTb (http://www.psort.org/psortb/index.html) [], Cello (http://cello.life.nctu.edu.tw/) [], SubLoc (http://www.bioinfo.tsinghua.edu.cn/subloc/) [] and Pslpred (http://www.imtech.res.in/raghava/submit.html) []. For localization predictions, the protein sequences were taken in FASTA format, th […]

library_books

A Novel Pan Genome Reverse Vaccinology Approach Employing a Negative Selection Strategy for Screening Surface Exposed Antigens against leptospirosis

2017
Front Microbiol
PMCID: 5348505
PMID: 28352257
DOI: 10.3389/fmicb.2017.00396

[…] redicted far less accurately and reliably than cytoplasmic proteins (CYTs) and inner membrane proteins (IMPs) by these frequently used bioinformatic tools, including PSORTb, Cello, Proteome Analysis, Subloc, and LOCtree (Gardy and Brinkman, ). The usage of these popular bioinformatic tools remains a matter for further investigation, as they may miss or exclude highly antigenic vaccine candidates. […]

library_books

Comparative phylogenomic analysis provides insights into TCP gene functions in Sorghum

2016
Sci Rep
PMCID: 5137041
PMID: 27917941
DOI: 10.1038/srep38488

[…] csbio.sjtu.edu.cn/bioinf/plant-multi/), WoLFPSORT (http://www.genscript.com/wolf-psort.html), DISTILL (http://distill.ucd.ie/distill/), MultiLoc2 (http://abi.inf.uni-tuebingen.de/Services/MultiLoc2), SubLoc v1.0 (http://www.bioinfo.tsinghua.edu.cn/SubLoc/) and CELLO v2.5 (http://cello.life.nctu.edu.tw/). Except for Plant-mPloc, all other prediction programs provide confidence scores. The cutoff us […]

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SubLoc institution(s)
Institute of Bioinformatics and Systems Biology, MOE Key Laboratory of Bioinformatics, State Key Laboratory of Biomembrane and Membrane Biotechnology, Department of Biological Sciences and Biotechnology, Tsinghua University, Beijing, China
SubLoc funding source(s)
This work was supported by Foundational Science Research Grant from the 973 project (2003CB715900), a National Nature Science Grant (No. 90303017, No. 90408019) and the 863 projects (2002AA234041, 2002AA231031).

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