Subpathway-GM statistics

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Citations per year

Number of citations per year for the bioinformatics software tool Subpathway-GM
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Tool usage distribution map

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Associated diseases

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Subpathway-GM specifications

Information


Unique identifier OMICS_12664
Name Subpathway-GM
Interface Web user interface
Restrictions to use None
Input data Users need to submit molecules of interest (genes and metabolites).
Computer skills Basic
Stability Stable
Maintained Yes

Taxon


  • Primates
    • Homo sapiens

Documentation


Maintainer


  • person_outline Xia Li

Information


Unique identifier OMICS_12664
Name Subpathway-GM
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
Computer skills Advanced
Stability Stable
Requirements
graph, RBGL, igraph, XML, BiocGenerics
Maintained Yes

Taxon


  • Primates
    • Homo sapiens

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Versioning


No version available

Documentation


Maintainer


  • person_outline Xia Li

Publication for Subpathway-GM

Subpathway-GM citation

library_books

Detecting Disease Specific Pathway Substructures through an Integrated Systems Biology Approach

2017
Noncoding RNA
PMCID: 5831934
PMID: 29657291
DOI: 10.3390/ncrna3020020

[…] ng pathway knowledge. Furthermore, perturbations in subpathway regions of metabolic pathways could allow shedding light on understanding the causes of diseases [,].In Li et al. [], authors introduced Subpathway-GM, which uses a structural node similarity within pathways to identify metabolic subpathways based on information from genes and metabolites. Subpathway-GM has been implemented as a freely […]


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Subpathway-GM institution(s)
College of Bioinformatics Science and Technology, Harbin Medical University, Harbin, China; Department of Biochemistry and Molecular Biology, Harbin Medical University, Harbin, China; Key Laboratory of Cardiovascular Medicine Research, Harbin Medical University, Ministry of Education, China
Subpathway-GM funding source(s)
Funds for Creative Research Groups of the National Natural Science Foundation of China [81121003]; National Natural Science Foundation of China [61170154, 61073136, 81270511, 31200996 and 81000933]; Specialized Research Fund for the Doctoral Program of Higher Education of China [20102307120027 and 20102307110022]

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