Subread specifications

Unique identifier:
OMICS_01255
Software type:
Package/Module
Restrictions to use:
None
License:
GNU General Public License version 2.0
Version:
1.6.2
Maintained:
Yes
Alternative name:
Rsubread
Interface:
Command line interface
Operating system:
Unix/Linux
Computer skills:
Advanced
Stability:
Stable

Subtools

  • featureCounts
  • exactSNP
  • Sublong
  • Subjunc
  • Subindel

versioning

tutorial arrow
×
Upload and version your source code
Get a DOI for each update to improve tool traceability. Archive your releases so the community can easily visualize progress on your work.
Facilitate your tool traceability
Sign up for free to upload your code and get a DOI

No versioning.

Subread distribution

download

Subread support

Documentation

Maintainer

  • Wei Shi <>

forum

tutorial arrow
×
Communicate with other users
Participate in the forum to get support for using tools. Ask questions about technical specifications.
Take part in the discussion
Sign up for free to ask question and share your advices

No open topic.

Credits

tutorial arrow
×
Promote your skills
Define all the tasks you managed and assign your profile the appropriate badges. Become an active member.
Promote your work
Sign up for free to badge your contributorship

Publications

Institution(s)

Division of Bioinformatics, The Walter and Eliza Hall Institute of Medical Research, Parkville, VIC, Australia; Department of Computing and Information Systems, The University of Melbourne, Parkville, VIC, Australia; Department of Mathematics and Statistics, The University of Melbourne, Parkville, VIC, Australia

Funding source(s)

Supported by the Project Grant [1023454] and a Fellowship from the Australian National Health and Medical Research Council (NHMRC); Victorian State Government Operational Infrastructure Support; Australian Government [NHMRC IRIIS].

User review

tutorial arrow
×
Vote up tools and offer feedback
Give value to tools and make your expertise visible
Give your feedback on this tool
Sign up for free to join and share with the community
Sort by:

1 user review

star_border star_border star_border star_border star_border
star star star star star

1 user review

star_border star_border star_border star_border star_border
star star star star star
senaj's avatar image senaj's country flag

senaj

star_border star_border star_border star_border star_border
star star star star star

Easy to use. I routinely use featureCounts for RNA-Seq data it is much faster than HTSeq-count for generating read counts.

Related Tools