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Subread | Scalable read mapping by seed-and-vote

A toolkit for processing next-gen sequencing data. These programs were also implemented in Bioconductor R package Rsubread.

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1 user review

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senaj

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Easy to use. I routinely use featureCounts for RNA-Seq data it is much faster than HTSeq-count for generating read counts.

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Subread classification

Subread specifications

Unique identifier:
OMICS_01255
Software type:
Package/Module
Restrictions to use:
None
License:
GNU General Public License version 2.0
Stability:
Stable
Alternative name:
Rsubread
Interface:
Command line interface
Operating system:
Unix/Linux
Computer skills:
Advanced
Maintained:
Yes

Subtools

  • featureCounts
  • exactSNP

Subread distribution

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No versioning.

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Credits

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Publications

Institution(s)

Division of Bioinformatics, The Walter and Eliza Hall Institute of Medical Research, Parkville, Victoria, Australia

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