SWAN specifications

Information


Unique identifier OMICS_02303
Name Subset-quantile Within Array Normalization
Software type Package/Module
Interface Command line interface
Restrictions to use None
Biological technology Illumina
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License Artistic License version 2.0
Computer skills Advanced
Stability Stable
Requirements methods, BiocGenerics, Biobase, lattice, GenomicRanges, SummarizedExperiment, Biostrings, bumphunter
Maintained Yes

Versioning


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Documentation


Maintainer


  • person_outline Alicia Oshlack <>

SWAN article

SWAN citation

2016
PMCID: 5119954

[…] package minfi (aryee et al., 2014). first, we performed background correction and dye-bias normalization using noob (triche et al., 2013), followed by normalization between infinium probe types with swan (maksimovic et al., 2012). next, we filtered out probes based on the following criteria: (i) median detection p value ≥ 0.01 in one or more samples; (ii) bead count of less than three […]

SWAN institution(s)
Murdoch Childrens Research Institute, Parkville, Australia
SWAN funding source(s)
This work was supported by the Victorian Government's Operational Infrastructure Support Program to MCRI.

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