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Substrate cleavage site prediction software tools | Protein sequence analysis

HIVcleave
Web

HIVcleave

Permits to identify the cleavage sites of a query protein sequence by human…

Permits to identify the cleavage sites of a query protein sequence by human immunodeficiency virus (HIV)-1 and HIV-2 proteases. HIVcleave accepts as input a protein sequence in which each constituent…

PeptideCutter
Web

PeptideCutter

Predicts potential cleavage sites cleaved by proteases or chemicals in a given…

Predicts potential cleavage sites cleaved by proteases or chemicals in a given protein sequence. PeptideCutter returns the query sequence with the possible cleavage sites mapped on it and/or a table…

CaSPredictor
Desktop

CaSPredictor Caspase Substrate Predictor

A computer-based tool specific to caspase substrate prediction. CaSPredictor…

A computer-based tool specific to caspase substrate prediction. CaSPredictor predicted successfully 81% (111/137) of the cleavage sites in experimentally verified caspase substrates not annotated in…

LabCaS
Web

LabCaS

Predicts the calpain substrate cleavage sites from amino acid sequences. LabCaS…

Predicts the calpain substrate cleavage sites from amino acid sequences. LabCaS is based on a decision fusion protocol. It is robust to the extreme imbalance in positive and negative samples in the…

PoPS
Desktop

PoPS Prediction of Protease Specificity

A set of computational tools for investigating protease specificity. The main…

A set of computational tools for investigating protease specificity. The main PoPS program allows users to model and profile protease specificity and predict substrate cleavage. Other tools are…

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