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Succinylation site prediction software tools | Post-translational modification analysis

Compared with the labor-intensive and time-consuming experimental approaches, computational predictions of succinylation sites are much desirable due to their convenient and fast speed.Source text:(Zhao et al., 2015) Accurate in silico…
SuccinSite
Web

SuccinSite

A simple and efficient predictor for identifying succinylation sites.…

A simple and efficient predictor for identifying succinylation sites. SuccinSite predicts protein succinylation sites by incorporating three sequence encodings, i.e., k-spaced amino acid pairs,…

iPTM-mLys
Web

iPTM-mLys

Identifies multiple lysine post-translational modification (PTM) sites and…

Identifies multiple lysine post-translational modification (PTM) sites and their different types. iPTM-mLys represents the first multi-label PTM predictor ever established. The novel predictor is…

SucStruct
Desktop

SucStruct Succinylation using Structural features

Improves lysine succinylation prediction. SucStruct is designed to discriminate…

Improves lysine succinylation prediction. SucStruct is designed to discriminate succinylated from non-succinylated lysine residues. It is based on nine structural features like accessible surface…

PSSM-Suc
Desktop

PSSM-Suc Position Specific Scoring Matrix into bigram for Succinylation prediction

Uses an efficient combination of position specific scoring matrix (PSSM) +…

Uses an efficient combination of position specific scoring matrix (PSSM) + bigram for succinylation prediction. PSSM-Suc is a predictor that efficiently utilizes evolutionary features for predicting…

pSuc-PseRat
Web
SuccFind
Web

SuccFind

A succinylation site online prediction tool which is constructed to predict the…

A succinylation site online prediction tool which is constructed to predict the lysine succinylation sites based on two major categories of characteristics: sequence-derived features and…

iSuc-PseOpt
Web

iSuc-PseOpt

Predicts lysine succinylation sites in proteins. iSuc-PseOpt has been developed…

Predicts lysine succinylation sites in proteins. iSuc-PseOpt has been developed by incorporating the sequence-coupling effects into the general pseudo amino acid composition and using KNNC (K-nearest…

pSuc-Lys
Web

pSuc-Lys

Predicts lysine succinylation sites in proteins with PseAAC and ensemble random…

Predicts lysine succinylation sites in proteins with PseAAC and ensemble random forest approach. Compared with the existing predictors in this area, pSuc-Lys can achieve remarkably higher success…

iSuc-PseAAC
Web

iSuc-PseAAC

A succinylation site predictor is proposed by incorporating the peptide…

A succinylation site predictor is proposed by incorporating the peptide position-specific propensity into the general form of pseudo amino acid composition. The accuracy is 79.94%, sensitivity…

SucPred
Web

SucPred Succinylation site predictor

Predicts protein succinylation sites by using multiple feature encoding…

Predicts protein succinylation sites by using multiple feature encoding schemes. Promising results were obtained by the SucPred predictor with an accuracy of 88.65% using 5-fold cross validation on…

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