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SuGeT specifications

Information


Unique identifier OMICS_32369
Name SuGeT
Alternative name SuperGeneTree
Software type Application/Script
Interface Command line interface
Restrictions to use None
Input data Some labeled or unlabeled trees.
Operating system Unix/Linux
Programming languages C, C++
License GNU General Public License version 3.0
Computer skills Advanced
Stability Stable
Maintained Yes

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Maintainers


  • person_outline Aïda Ouangraoua
  • person_outline Manuel Lafond

Publication for SuperGeneTree

SuGeT citation

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Reconstructing a SuperGeneTree minimizing reconciliation

2015
BMC Bioinformatics
PMCID: 4602317
PMID: 26451911
DOI: 10.1186/1471-2105-16-S14-S4

[…] atisfies this property preserves the speciations of G . Note that if T preserves the speciations of G , then it is necessarily compatible with G . We call T|LGi the copy of Gi in T.MINIMUM SPECIATION SUPERGENETREE (MINSPECSGT PROBLEM):Input: A species set Σ and a binary species tree S for Σ; a gene family Γ, a set Γi,1≤i≤k of disjoint subsets of Γ, and a set G=G1,G2,⋯,Gk of consistent independent […]


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SuGeT institution(s)
Departement d’Informatique (DIRO), Universite de Montreal, Montreal, QC, Canada; Department of Mathematics, Simon Fraser University, Burnaby, BC, Canada; Departement d’Informatique, Universite de Sherbrooke, Sherbrooke, QC, Canada
SuGeT funding source(s)
Supported by the Fonds de Recherche du Quebec Nature et Technologie (FRQNT); by the Natural Sciences and Engineering Research Council (NSERC) (Discovery Grant RGPIN249834); by NSERC; and by the Canada Research Chairs (CRC) (CRC Tier2 Grant 950-230577).

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