SuiteMSA specifications


Unique identifier OMICS_15927
Name SuiteMSA
Alternative name Suite of Multiple Sequence Alignment
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Computer skills Medium
Version 1.3
Stability Stable
Maintained Yes




No version available


  • person_outline Etsuko Moriyama

Publication for Suite of Multiple Sequence Alignment

SuiteMSA citations


IVisTMSA: Interactive Visual Tools for Multiple Sequence Alignments

Evol Bioinform Online
PMCID: 4362671
PMID: 25861209
DOI: 10.4137/EBO.S18980

[…] user to compute conserved regions of two alignments consisting of less than 1,000 sequences. It also did not allow loading multiple test alignments simultaneously. Many software tools such as STRAP, SuiteMSA, PFAAT, and SeaView provide graphical user interfaces for generating MSAs, but they do not allow the user to load several sequence files simultaneously. MSA reconstruction tool allows the use […]


Sequence embedding for fast construction of guide trees for multiple sequence alignment

PMCID: 2893182
PMID: 20470396
DOI: 10.1186/1748-7188-5-21

[…] of seed sequences, using a very fast 6-mer pair-wise distance function and a divisive clustering algorithm with an average time complexity of (N log N). This algorithm was incorporated into the MAFFT suite of multiple sequence alignment programs []. They reported that this heuristic allowed the rapid clustering and alignment of approximately 60,000 sequences in only a few minutes. When used for a […]

SuiteMSA institution(s)
Department of Computer Science and Engineering, University of Nebraska, Lincoln, NE, USA; School of Biological Sciences, University of Nebraska, Lincoln, NE, USA; Center for Plant Science Innovation, University of Nebraska, Lincoln, NE, USA
SuiteMSA funding source(s)
This work has been partially supported by NSF AToL grant 0732863.

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