tutorial arrow
×
Submit new tools
Share tools covering the current topic. Provide easy-to-follow guidelines to improve their usability.

SUMOylation site and SIM prediction software tools | Post-translational modification analysis

Post-translational modification by the Small Ubiquitin-like Modifier (SUMO) proteins, a process termed SUMOylation, is involved in many fundamental cellular processes. SUMO proteins are conjugated to a protein substrate, creating an interface for…
GPS-SUMO
Web

GPS-SUMO

A tool for the prediction of both sumoylation sites and SUMO-interaction motifs…

A tool for the prediction of both sumoylation sites and SUMO-interaction motifs (SIMs) in proteins. To obtain an accurate performance, a new generation group-based prediction system (GPS) algorithm…

pSumo-CD
Web

pSumo-CD

Predicts sumoylation sites in proteins with covariance discriminant algorithm…

Predicts sumoylation sites in proteins with covariance discriminant algorithm by incorporating sequence-coupled effects into general PseAAC. Rigorous cross-validations indicated that pSumo-CD…

JASSA
Web

JASSA Joined Advanced Sumoylation Site and Sim Analyser

Uses a scoring system based on a position frequency matrix derived from the…

Uses a scoring system based on a position frequency matrix derived from the alignment of experimental SUMOylation sites or SUMO-interacting motifs (SIMs). Compared to existing web-tools, JASSA…

PTMProber
Web

PTMProber

A homology-based pipeline that allows identification of potential modification…

A homology-based pipeline that allows identification of potential modification sites for most of the proteomes lacking post-translational modifications (PTMs) data. PTMProber provides a unique…

SUMOAMVR
Web

SUMOAMVR

This service can predict the SUMOAMVR types and sumoylation states. Here, we…

This service can predict the SUMOAMVR types and sumoylation states. Here, we defined the SUMOAMVR as sumoylation related amino acid variations that affect sumoylation sites or enzymes involved in the…

seeSUMO
Web

seeSUMO sequence-based evaluation of SUMOylation sites

A web server for sequence-based prediction of protein sumoylation sites. Users…

A web server for sequence-based prediction of protein sumoylation sites. Users can enter an amino acid sequence or multiple protein sequences in the FASTA format, specify the methods (either random…

SUMOhydro
Web

SUMOhydro

Predicts sumoylation lysine (K) sites in proteins by introduction of…

Predicts sumoylation lysine (K) sites in proteins by introduction of hydrophobicity to binary encoding. With the assistance of a support vector machine, SUMOhydro was trained and tested using a…

SUMOplot
Web

SUMOplot

Allows prediction and scoring of sumoylation sites in user protein.

Allows prediction and scoring of sumoylation sites in user protein.

By using OMICtools you acknowledge that you have read and accepted the terms of the end user license agreement.