SuperComplex specifications


Unique identifier OMICS_11248
Name SuperComplex
Alternative name SCI-BN
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages MATLAB
Computer skills Advanced
Stability Stable
Maintained Yes




No version available


  • person_outline Ziv Bar-Joseph

Publication for SuperComplex

SuperComplex citations


Clustering PPI data by combining FA and SHC method

BMC Genomics
PMCID: 4331806
PMID: 25707632
DOI: 10.1186/1471-2164-16-S3-S3

[…] that we should consider the gene expression data and detect protein complexes basing on uncertain graph model [,],There are many new algorithms also, such as Ovrlp, PE-WCC, UVCluster, AP, GFA, ADMSC, SCI-BN, CORE, FAG-EC, HC-PIN, IPCA, CP-DR, LF-PIN, ABC algorithm [-] and so on.Synchronization is a natural phenomenon ranging from the metabolism in the cell to social behavior in groups of individua […]


Identifying protein complexes with fuzzy machine learning model

Proteome Sci
PMCID: 3908516
PMID: 24565338
DOI: 10.1186/1477-5956-11-S1-S21

[…] We downloaded yeast protein interaction data from DIP [] with a total of 17,201 PPI pairs. The protein complex data was downloaded from a public repository located at It consists of 493 protein complexes from MIPS [] and TAP-MS [] (size >2). […]

SuperComplex institution(s)
School of Computer Science, Carnegie Mellon University, Pittsburgh, PA, USA; Department of Structural Biology, University of Pittsburgh School of Medicine, Pittsburgh, PA, USA
SuperComplex funding source(s)
This work was supported in part by National Science Foundation grants CAREER 0448453, EIA0225656, EIA0225636, CAREER CC044917, and National Institutes of Health grant LM07994-01.

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