SuperHirn protocols

SuperHirn specifications


Unique identifier OMICS_02395
Name SuperHirn
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes


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  • person_outline Lukas Mueller <>

Publication for SuperHirn

SuperHirn IN pipelines

PMCID: 4252003
PMID: 25420746
DOI: 10.1186/s12859-014-0376-0

[…] replicates were then evaluated by the scatter and bland-altman plot [23] (figuresĀ 6 and 7). in figuresĀ 6 and 7, peak area values were used for ab3d, mzmine 2 and msight, volume values were used for superhirn and intensity values were used for openms, which does not provide area values. parameters and detected features (rt and m/z) using data set 3 for each software package are provided […]

PMCID: 3827840
PMID: 24207061
DOI: 10.1186/1559-0275-10-16

[…] raw data of duplicate measurements were acquired in profile mode on a fourier-transform ltq ms (ft-ltq; thermo electron, san jose, ca), converted to mzxml [68] and analyzed with the software superhirn [69]. for sequence identification ms/ms spectra of centroided raw files were converted to mzxml and searched against the ipi human database v3.26 using the search algorithm sequest v27 […]

SuperHirn institution(s)
Institute of Molecular Systems Biology, ETH Zurich, Zurich, Switzerland

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