Superlink-Online SNP protocols

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Superlink-Online SNP statistics

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Superlink-Online SNP specifications

Information


Unique identifier OMICS_09409
Name Superlink-Online SNP
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Omer Weissbrod <>

Information


Unique identifier OMICS_09409
Name Superlink-Online SNP
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Omer Weissbrod <>

Publications for Superlink-Online SNP

Superlink-Online SNP in pipeline

2016
PMCID: 4967317
PMID: 27475985
DOI: 10.1186/s12881-016-0314-2

[…] of 150 dna samples of unrelated, ethnically matched control individuals was done by dhplc as previously described []., multipoint lod score for the pedigree at the shared locus was calculated using superlink online snp 1.1 (http://cbl-hap.cs.technion.ac.il/superlink-snp/index.php), assuming an autosomal recessive mode of inheritance with penetrance of 0.99 and disease mutant gene frequency […]


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Superlink-Online SNP in publications

 (2)
PMCID: 5837213
PMID: 28334855
DOI: 10.1093/brain/awx013

[…] d4s3255, d4s2971 and d4s1583. all physical positions mentioned are according to the grch37/hg19 genome assembly. multipoint logarithm of odds (lod) score at the shared locus was calculated using superlink-online snp 1.1 (http://cbl-hap.cs.technion.ac.il/superlink-snp/) (), assuming an autosomal recessive mode of inheritance with penetrance of 0.99 and disease mutant gene frequency of 0.01., […]

PMCID: 4418656
PMID: 25938837
DOI: 10.1371/journal.pone.0126660

[…] members was conducted. snp-chip genotyping was carried out in 9 affected and 15 unaffected pedigree members. two-point and multipoint linkage analyses of genome-wide snp data were performed using superlink-online snp-1.1 and a locus was mapped to chromosome 19q with a maximum lod score of 3.24. the locus contains 12 ensemble predicted canine genes and is syntenic to a region on chromosome 2 […]


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Superlink-Online SNP institution(s)
Department of Computer Science, Technion-Israel Institute of Technology, Haifa, Israel; Department of Computer Science, University of Texas at Austin, Austin, TX, USA; Donald Bren School of Information and Computer Sciences, UC Irvine, CA, USA; Department of Computer Science, University of Ottawa, Ottawa, Canada; The Simon Winter Institute for Human Genetics, Bnai-Zion Medical Center, Haifa, Israel; Research and Development Center, The Galilee Society, Shefa-Amr, Israel; Holy Family Hospital, Nazareth, Israel; The Rappaport Faculty of Medicine and Research Institute, Technion-Israel Institute of Technology, Haifa, Israel; Department of Statistics, University of Washington, Seattle, WA, USA
Superlink-Online SNP funding source(s)
This work was supported by the National Institutes of Health [5R01HG004175-03], the Israeli Science Foundation and the Israeli Ministry of Science and Technology [3-8095].

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