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Supernova

Allows to create true diploid de novo assemblies. Supernova can separate homologous chromosomes over long distances, in this sense capturing the true biology of a diploid genome. The Supernova approach is based on seven human samples. These assemblies used identical code, with same parameters as a ‘pushbutton’ process that ran in two days on a single server. The diploid human assemblies from this tool use sequence from the same sample. This approach yields much longer phase blocks than the previous diploid human assemblies. In this case, the diploid human assemblies are the first to be validated using finished sequence from the same sample and the first whose phasing accuracy has been validated using parental sequences

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Supernova forum

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Supernova versioning

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Supernova classification

Supernova specifications

Software type:
Package/Module
Restrictions to use:
None
Output format:
FASTA
Programming languages:
C++
Computer skills:
Advanced
Maintained:
Yes
Interface:
Command line interface
Input format:
FASTQ
Operating system:
Unix/Linux
License:
GNU Affero General Public License version 3
Stability:
Stable
Source code URL:
https://github.com/10XGenomics/supernova

Supernova support

Maintainer

  • David Jaffe < >

Credits

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Publications

Institution(s)

10x Genomics, Pleasanton CA, USA

Link to literature

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