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Number of citations per year for the bioinformatics software tool SuperQuant
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This map represents all the scientific publications referring to SuperQuant per scientific context
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SuperQuant specifications

Information


Unique identifier OMICS_09532
Name SuperQuant
Alternative name SuperQuant node
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Operating system Windows
Programming languages C#
Computer skills Medium
Version 1.0
Stability Stable
Requirements
Thermo Proteome Discoverer
Maintained Yes

Versioning


No version available

Documentation


Maintainer


  • person_outline Frank Kjeldsen

Publication for SuperQuant node

SuperQuant citations

 (6)
library_books

SuperQuant assisted comparative proteome analysis of glioblastoma subpopulations allows for identification of potential novel therapeutic targets and cell markers

2018
Oncotarget
PMCID: 5823648
PMID: 29507698
DOI: 10.18632/oncotarget.24321

[…] lerance–0.02 Th; fixed modifications–carboxamidomethylated cysteine, variable modifications–oxidized methionine and labeled N-terminal and lysine. Reversed decoy database was searched separately. For SuperQuant analysis, all MS2 spectra were processed using home-built deconvolution node to produce fragmentation spectra consisting only of 1+ fragments. Next, deconvoluted spectra were processed with […]

library_books

Predictive Value of Interferon Lambda Gene Polymorphisms for Treatment Response in Chronic Hepatitis C

2014
PLoS One
PMCID: 4231027
PMID: 25393304
DOI: 10.1371/journal.pone.0112592

[…] d by Cobas Amplicor Monitor 2.0, Cobas TaqMan HCV (Roche Diagnostics, Mannheim, Germany), Siemens Versant Quantitative bDNA 3.0 (Siemens Diagnostics, Eschborn, Germany) or National Genetics Institute SuperQuant (NGI, Culver City, CA, USA) assays.HCV genotyping was performed by a reverse hybridisation assay (Versant InnoLipa, HCV assays vs1 and vs2, Innogenetics, Zwijnaarde, Belgium and Siemens Dia […]

library_books

Occult HBV Infection: A Faceless Enemy in Liver Cancer Development

2014
Viruses
PMCID: 4014712
PMID: 24717680
DOI: 10.3390/v6041590

[…] OBI detection range of these NAT assays is an average of 32–62 copies/mL or 5.10 IU/mL. However, most commercially available laboratory tests (Cobas Taqman 48 HBV, Cobas Amplicor HBV Monitor, NGI HBV SuperQuant, etc.) can only detect levels greater than 103 copies/mL [], implying that most cases of OBI are not diagnosed. The preferred lower limit of detection (LLOD) for HBV DNA, standardized by th […]

library_books

Randomised clinical trial: pre dosing with taribavirin before starting pegylated interferon vs. standard combination regimen in treatment naïve patients with chronic hepatitis C genotype 1

2012
PMCID: 3492905
PMID: 22708649
DOI: 10.1111/j.1365-2036.2012.05188.x

[…] at a central facility (Covance Central Laboratory, Indianapolis, IN, USA). The primary efficacy end point was the proportion of patients who experienced, an undetectable plasma HCV RNA <39 IU/mL [NGI SuperQuant (National Genetics Institute, Los Angeles, CA, USA); sensitivity to 39 IU/mL] or a ≥2-log10 drop from baseline after 4 weeks of combination therapy. Secondary efficacy end points included t […]

library_books

Associations Between Hepatitis B Virus Genotype and Mutants and the Risk of Hepatocellular Carcinoma

2008
PMCID: 2518166
PMID: 18695135
DOI: 10.1093/jnci/djn243

[…] detection limit of 1–5 × 102 copies/mL (). The results of this assay were strongly correlated (P < .001 based on linear regression analysis) with the results of three commercial assays for HBV titer: SuperQuant assay (National Genetics Institute, Culver City, CA; R2 = .9866), the Amplicor assay (Roche Diagnostics, Indianapolis, IN; R2 = .983), and the bDNA assay (Chiron Corporation, Emeryville, CA […]

library_books

Demographics of a large cohort of urban chronic hepatitis C patients

2008
PMCID: 2716882
PMID: 19669268
DOI: 10.1007/s12072-008-9086-x

[…] performed using the second generation ELISA for antibody (EIA II, Abbott Lab, Chicago, IL). Testing for HCV RNA by reverse transcriptase-polymerase chain reaction (RT-PCR) was accomplished using the superquant assay (PCR range: <200 to >2,000,000 copies/ml; National Genetics Institute, CA) or the Amplicor HCV monitor test version 2.0 (PCR range: <2,500 to >2,800,000 IU/ml; Roche Molecular, Pleaso […]


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SuperQuant institution(s)
Department of Biochemistry and Molecular Biology, University of Southern Denmark, Odense, Denmark

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