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SuperSite specifications

Information


Unique identifier OMICS_21193
Name SuperSite
Restrictions to use None
Community driven No
Data access Browse
User data submission Not allowed
Version 1.0
Maintained No

Additional information


http://bioinf-tomcat.charite.de/supersite/documentation.jsp

Publication for SuperSite

SuperSite citations

 (5)
library_books

Bioinformatics and Drug Discovery

2017
Curr Top Med Chem
PMCID: 5421137
PMID: 27848897
DOI: 10.2174/1568026617666161116143440

[…] wissSimilarity [] to identify potential drug candidate that can interact with the protein of interest. Such screening approach is greatly enhanced by metabolic and ligand databases such ChEMBL [] and SuperSite []. Such analyses not only shed lights on identifying drug-target interactions, but also facilitate the identification of side effects of individual drugs, e.g., a drug that can bind to many […]

library_books

Stabilization of a soluble, native like trimeric form of an efficiently cleaved Indian HIV 1 clade C envelope glycoprotein

2017
PMCID: 5437231
PMID: 28283570
DOI: 10.1074/jbc.M117.776419

[…] w dissociation curve suggested that the purified Env not only forms native-like trimers but also was properly cleaved and maintained quaternary structure. The bNAb, PGT121 that recognizes the Asn-332 supersite bound with a fast on-rate but with no dissociation, and in fact secondary association was seen during wash, indicating very tight binding. Therefore the dissociation constant could not be ca […]

library_books

Community Composition and Abundance of Bacterial, Archaeal and Nitrifying Populations in Savanna Soils on Contrasting Bedrock Material in Kruger National Park, South Africa

2016
Front Microbiol
PMCID: 5069293
PMID: 27807431
DOI: 10.3389/fmicb.2016.01638

[…] on representative non-manipulated savanna landscapes in the park (Smit et al., ). Two soil catenas on granitic and basaltic bedrock, respectively, were chosen as study sites within the KNP's research supersite network. Catenas are hydrologically linked hillslope soils with dynamic solute, particle and colloid transport processes, leading to soil differentiation along their slopes, which was more p […]

library_books

Transplanting Supersites of HIV 1 Vulnerability

2014
PLoS One
PMCID: 4084637
PMID: 24992528
DOI: 10.1371/journal.pone.0099881

[…] fication of supersites of HIV-1 vulnerability to broadly neutralizing antibodies on the pathogen, structural characterization of antibody-epitope interactions, structure-based computational design of supersite transplants, and antigenic and structural analysis of the supersite transplants. The computational scaffolding/transplantation procedure is essential to this vaccine strategy and contains fo […]

library_books

Prediction of vitamin interacting residues in a vitamin binding protein using evolutionary information

2013
BMC Bioinformatics
PMCID: 3577447
PMID: 23387468
DOI: 10.1186/1471-2105-14-44

[…] In this study, we collected data from SuperSite documentation [] and extracted 1061 PDB IDs of protein having contact with vitamins in PDB. We downloaded the sequence of all chains of these PDB Ids from Protein Data Bank []. In next step, […]

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SuperSite institution(s)
Institute of Molecular Biology and Bioinformatics, Structural Bioinformatics Group, Charité- Medical University Berlin, Berlin, Germany
SuperSite funding source(s)
Supported by Deutsche Krebshilfe, Deutsche Forschungsgemeinschaft (DFG SFB-449); International Research Training Group on Genomics and Systems Biology of Molecular Networks (GRK1360).

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