SuperTranscript specifications

Unique identifier:
OMICS_12974
Software type:
Pipeline/Workflow
Restrictions to use:
None
Input format:
FASTA, TXT
Operating system:
Unix/Linux, Mac OS, Windows
Computer skills:
Advanced
Requirements:
Pandas, Networkx, Numpy, Matplotlib
Alternative name:
Lace
Interface:
Command line interface
Input data:
Group of transcripts, de novo contigs, reference sequence, long reads (or a mixture of all the above)
Output format:
FASTA, GFF, PSL, PDF
Programming languages:
Python, R
Stability:
Stable
Maintained:
Yes

versioning

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SuperTranscript distribution

download

SuperTranscript support

Documentation

Maintainer

  • Alicia Oshlack <>

Additional information

https://github.com/Oshlack/Lace

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Credits

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Publications

Institution(s)

Murdoch Childrens Research Institute, Royal Children’s Hospital, Victoria, Australia; School of BioSciences, University of Melbourne, Victoria, Australia

Funding source(s)

This project was funded by an NHMRC Career Development Fellowship APP1051481.

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