SuperTranscript specifications

Information


Unique identifier OMICS_12974
Name SuperTranscript
Alternative name Lace
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Input data Group of transcripts, de novo contigs, reference sequence, long reads (or a mixture of all the above)
Input format FASTA, TXT
Output format FASTA, GFF, PSL, PDF
Operating system Unix/Linux, Mac OS, Windows
Programming languages Python, R
Computer skills Advanced
Stability Stable
Requirements Pandas, Networkx, Numpy, Matplotlib
Maintained Yes

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Documentation


Maintainer


  • person_outline Alicia Oshlack <>

Additional information


https://github.com/Oshlack/Lace

Publication for SuperTranscript

SuperTranscript institution(s)
Murdoch Childrens Research Institute, Royal Children’s Hospital, Victoria, Australia; School of BioSciences, University of Melbourne, Victoria, Australia
SuperTranscript funding source(s)
This project was funded by an NHMRC Career Development Fellowship APP1051481.

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