snm specifications

Information


Unique identifier OMICS_02036
Name snm
Alternative name Supervised Normalization of Microarrays
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU Lesser General Public License version 3.0
Computer skills Advanced
Stability Stable
Maintained Yes

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Documentation


snm article

snm citation

2017
PMCID: 5610412

[…] per million mapped reads) below 5 were excluded from analysis. gene expression data were log2 transformed. a large variance in gene expression was observed among animals (additional file 1b); supervised normalization of microarrays (snm) [25] was used to remove the variance associated with this animal effect. the full snm model included longitudinal time point as the biological effect […]

snm institution(s)
Department of Genome Sciences, University of Washington, Seattle, WA, USA

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