SV2 specifications

Unique identifier:
OMICS_16722
Software type:
Package/Module
Restrictions to use:
None
Input format:
BAM, VCF, BED
Output format:
VCF
Programming languages:
Python
Computer skills:
Advanced
Maintained:
Yes
Name:
support-vector structural-variant genotyper
Interface:
Command line interface
Input data:
A BAM file with supplementary alignment tags (SA), a SNV VCF file with allelic depth, and either a BED or VCF file of deletions and tandem duplications to be genotyped.
Output data:
The genotypes and annotations for genes, repeats, and other befitting statistics for SV analysis.
Operating system:
Unix/Linux
License:
MIT License
Stability:
Stable

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SV2 distribution

download

SV2 support

Documentation

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Publications

Institution(s)

Beyster Center for Genomics of Psychiatric Diseases, University of California San Diego, La Jolla, CA, USA; Department of Psychiatry, University of California San Diego, La Jolla, CA, USA; Department of Cellular and Molecular Medicine and Pediatrics, University of California San Diego, La Jolla, CA, USA; Biomedical Sciences Graduate Program, University of California San Diego, La Jolla, CA, USA

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