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Associated diseases

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supraHex specifications

Information


Unique identifier OMICS_04800
Name supraHex
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 2.0
Computer skills Advanced
Version 1.7.3
Stability Stable
Requirements
hexbin
Maintained No

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Documentation


Additional information


http://supfam.org/supraHex/docs.html

Publication for supraHex

supraHex in publications

 (2)
PMCID: 5313649
PMID: 28102032
DOI: 10.1002/cam4.961

[…] levels (hypo‐ and hyper‐methylated) using euclidean distance hierarchical clustering with complete linkage using all 4 cpg loci. the corresponding methylation heatmap was visualized using the suprahex v1.8.0 r package . to allow for statistical comparison, grouping of the tcga samples was based on the distribution of m‐values for the single downstream cdkn2a cpg (cg12840719) assayed […]

PMCID: 5075905
PMID: 27774996
DOI: 10.1038/srep35671

[…] the control group taking into account the paired design across the 3 cell lines, and used for further analysis. for gene clustering and visualization, the gene expression matrix was analyzed by the suprahex package. genes with similar expression changes were self-organised onto nearby regions of a supra-hexagonal map. the resulting map was visualized to display sample-specific expression […]


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supraHex institution(s)
Computational Genomics Group, Department of Computer Science, University of Bristol, Bristol, UK
supraHex funding source(s)
Supported by the Biotechnology and Biological Sciences Research Council (BB/G022771/1).

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