SurreyFBA statistics

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SurreyFBA specifications

Information


Unique identifier OMICS_05178
Name SurreyFBA
Software type Package/Module
Interface Command line interface, Graphical user interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages C++
License GNU General Public License version 3.0
Computer skills Advanced
Version 2.32
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Andrzej Kierzek <>

Publication for SurreyFBA

SurreyFBA in publications

 (4)
PMCID: 4728432
PMID: 26813959
DOI: 10.1038/srep19771

[…] to generate 2000 metabolic landscapes., detailed formulation of the fast imat algorithm and comparison with the standard approach is given in the and . the algorithm has been implemented in our surreyfba software (v2), which is available at http://sysbio3.fhms.surrey.ac.uk/sfba/index.html. the jymet interface of surreyfba was used for conversion of recon 2 sbml to surreyfba format. gebra […]

PMCID: 4517854
PMID: 26218987
DOI: 10.1371/journal.pone.0134014

[…] and are available in the supplementary data file . for solving the flux balance analysis optimization problems we used a freely available wrapper on the glpk (gnu linear programming kit) called surreyfba. the program is freeware and available for download from (http://sysbio3.fhms.surrey.ac.uk/). its main features have been presented in []. the program can be used as a cli (command-line […]

PMCID: 4373785
PMID: 25806817
DOI: 10.1371/journal.pone.0119016

[…] and flavor. most of the tools are based on matlab, such as the cobra toolbox 2.0 [], cellnetanalyzer [], fba-simvis [] or the raven toolbox []. other tools are stand-alone software, for instance surreyfba [] or optflux []. fame is the first web-based approach to stoichiometric flux analysis []., biggr provides easy access to metabolic flux analysis for the large user base of the r […]

PMCID: 3534579
PMID: 23176288
DOI: 10.1186/1745-6150-7-41

[…] i assumed that only a single gene is influenced per cell, and the synergistic effects of multiple te insertions were not investigated., first, flux variability analysis was performed using the surreyfba tool [] for each of the 2766 non-boundary metabolites of the human metabolic network, recon1 [], using an exchange reaction for each metabolite as an objective function. this allowed […]


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SurreyFBA institution(s)
Faculty of Health and Medical Sciences, University of Surrey, Guildford, Surrey, UK
SurreyFBA funding source(s)
Supported by BBSRC projects (BB/H004262/1 and BB/D011582/1).

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