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Information
| Unique identifier | OMICS_02373 |
|---|---|
| Name | survcomp |
| Software type | Package/Module |
| Interface | Command line interface |
| Restrictions to use | None |
| Operating system | Unix/Linux, Mac OS, Windows |
| Programming languages | R |
| License | Artistic License version 2.0 |
| Computer skills | Advanced |
| Version | 1.30.0 |
| Stability | Stable |
| Requirements |
stats, grid, graphics, Biobase, survival, KernSmooth, xtable, Hmisc, prodlim, R(>=3.4), ipred, SuppDists, survivalROC, bootstrap, rmeta, CPE, clinfun
|
| Maintained | Yes |
Versioning
No version available
Documentation
Maintainer
- person_outline Benjamin Haibe-Kains
Publications for survcomp
Survcomp: an R/Bioconductor package for performance assessment and comparison of survival models.
survcomp citations
(18)Molecular and clinical features of the TP53 signature gene expression profile in early stage breast cancer
[…] used to calculate risk scores []. Predictive performances for RFS were compared using risk scores ofTP53 signature, Mammaprint, OncotypeDX, and PAM50. Concordance index calculated using the R package survcomp was used to compare predictive performance []. Intrinsic subtype by PAM50 was defined using genefu version 2.6.0 with the RNA-seq count data []. […]
Decoding critical long non coding RNA in ovarian cancer epithelial to mesenchymal transition
[…] genes. Differential gene expression P-values, obtained from the multiple independent data sets, were summarized by computing the Fisher’s combined probability test by using the R/Bioconductor package Survcomp. The P-values represent overall significance of the differential expression of these important genes inferred from multiple independent data sets. Collectively, the results indicate that DNM3 […]
Limits of radiomic based entropy as a surrogate of tumor heterogeneity: ROI area, acquisition protocol and tissue site exert substantial influence
[…] Meier method. We computed the concordance index for validating the predictive ability of a model based on the increase in entropy for the prediction of overall survival. For this we used the package survcomp from Bioconductor. Statistical analyses were performed using R version 3.3.0 and SPSS 24.0. […]
Validation of Nomograms for Survival and Metastases after Hysterectomy and Adjuvant Therapy in Uterine Cervical Cancer with Risk Factors
[…] SPSS Inc., Chicago, IL) was used to evaluate the log-rank tests and the Cox-regression multivariate analyses. The R software version 3.3.2 was used for the calculation of the C-index. Using packages “survcomp” and “compareC” of the R software version 3.3.2, each C-index was calculated and the C-indies of nomograms scores and our Cox-regression models for each survival were compared, respectively. […]
A Practical Guide to Visualization and Statistical Analysis of R. solanacearum Infection Data Using R
[…] (), dplyr (), ggplot2 (), modelr () and stringr () [these and other helpful packages are part of the tidyverse ()].Functions from the following packages are used for analysis: MESS (), survival (; ), survcomp (; ), rms (, ), coxme (), lme4 (), lmerTest (), multcomp (), and rcompanion ().To able to work with the Supplementary “R Markdown” (.Rmd) files, the packages rmarkdown () and knitr (, , ) are […]
Squalene epoxidase is a bona fide oncogene by amplification with clinical relevance in breast cancer
[…] els respectively, using the Tukey honest significant difference method to compare levels in the latter case. Survival curves were plotted using the Kaplan-Meier estimators, generated with the package survcomp, and P values were calculated with the log-rank test. For survival analyses including more than one variable, a stepwise backward-forward Cox proportional hazards regression model was employe […]
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