survivALL statistics

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Associated diseases

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survivALL specifications

Information


Unique identifier OMICS_23007
Name survivALL
Alternative name survivAPP
Software type Application/Script
Interface Web user interface
Restrictions to use None
Input data Measure data, Clinical data
Input format TXT
Computer skills Basic
Stability No
Maintained No

Maintainer


This tool is not available anymore.

Additional information


https://cran.r-project.org/web/packages/survivALL/survivALL.pdf

Information


Unique identifier OMICS_23007
Name survivALL
Alternative name survivAPP
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License MIT License
Computer skills Advanced
Version 0.9.1
Stability No
Source code URL https://cran.r-project.org/src/contrib/survivALL_0.9.1.tar.gz
Maintained No

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Maintainer


This tool is not available anymore.

Additional information


https://cran.r-project.org/web/packages/survivALL/survivALL.pdf

Publication for survivALL

survivALL in publications

 (3)
PMCID: 5882323
PMID: 29662632
DOI: 10.18632/oncotarget.24743

[…] data. the msk82, emc192 and emc286 datasets were directly integrated with batch-correction using combat. exhaustive survival analysis was performed by considering all possible cut-points using the survivall package. p values were derived from wilcoxon test and were two-tailed. immunohistochemical analysis of ikkβ was also performed in cohort of 13 primary breast carcinomas and 5 matched bone […]

PMCID: 5395888
PMID: 28420338
DOI: 10.1186/s12874-017-0336-2

[…] big|\boldsymbol{x}\right)={s}_0{(t)}^{\exp \left(\eta \right)} $$\end{document}st|x=s0texpη , where s(t|x) is the probability of surviving beyond time t given predictors x, and s 0(t) is the baseline survivall function at time t, where s 0(t) = exp[−∫0t h 0(u)du]. to make predictions at a specific time-point τ, one requires estimates \documentclass[12pt]{minimal} \usepackage{amsmath} \usep […]

PMCID: 3561608
PMID: 23378855
DOI: 10.5114/jcb.2012.32560

[…] and palpation of para-aortic lymph nodes) had 704 patients. it was compared to standard surgery plus lymphadenectomy in 704 patients. there was no significant differences in the 5-year overall survivall between these two arms (81% for standard surgery versus 80% for lymphadenectomy arm; hr = 1.16, p = 0.31). the 5-year recurrence-free survival was in favor of standard surgery (79% vs. 73%; […]


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survivALL institution(s)
Applied Bioinformatics of Cancer, University of Edinburgh Cancer Research Centre, Institute of Genetics and Molecular Medicine, Edinburgh, UK; Systems Immunology Group, Division of Genetics and Genomics, The Roslin Institute and Royal (Dick) School of Veterinary Studies, University of Edinburgh, Midlothian, UK
survivALL funding source(s)
Supported by Breast Cancer Now, The Roslin Institute’s BBSRC Institute Strategic Program Grant (BBS/E/D/20211552), a Cancer Research UK PhD studentship, an Edinburgh College of Medicine and Veterinary Medicine and Edinburgh Global Research Scholarship.

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