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survminer specifications


Unique identifier OMICS_19772
Name survminer
Software type Package/Module
Interface Command line interface
Restrictions to use Academic or non-commercial use
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 2.0
Computer skills Advanced
Version 0.4.0
Stability Stable
ggplot2, ggpubr
Maintained Yes




No version available



  • person_outline Alboukadel Kassambara

survminer citations


NOTCH mediated non cell autonomous regulation of chromatin structure during senescence

Nat Commun
PMCID: 5943456
PMID: 29743479
DOI: 10.1038/s41467-018-04283-9

[…] oduct moment correlation coefficient and test for significant deviation from no correlation. Plotting of TCGA data was performed using the ggplot2 R package. Survival analysis was performed using the survminer and survival R packages. Kaplan–Meier estimated survival curves were constructed using the TCGA clinical data. Statistical testing of differences between survival curves used the G-rho famil […]


NHERF1 and tumor microenvironment: a new scene in invasive breast carcinoma

PMCID: 5930748
PMID: 29716631
DOI: 10.1186/s13046-018-0766-7

[…] ical and continuous variables using the Cox proportional hazard regression model; HRs were computed along with their p-values.Data analysis was carried out using the statistical packages survival and survminer of the statistical language R, version 3.4 []. […]


A Temporal Examination of Platelet Counts as a Predictor of Prognosis in Lung, Prostate, and Colon Cancer Patients

Sci Rep
PMCID: 5920102
PMID: 29700384
DOI: 10.1038/s41598-018-25019-1

[…] isolate the effect of including each prediagnosis interval on prognosis predictions (Suppl. Methods). All statistical analyses were performed using R (Version 1.0.136) and built-in R Packages (dplyr, survminer, survival, ROCR). […]


Somatic genome editing with the RCAS TVA CRISPR Cas9 system for precision tumor modeling

Nat Commun
PMCID: 5899147
PMID: 29654229
DOI: 10.1038/s41467-018-03731-w

[…] ented as mean and SD, except otherwise indicated. Results were analyzed by unpaired two-tailed Student’s t tests using the R programming language. Kaplan–Meier survival curve were produced using the “survminer” R package and P values were generated using the Log-Rank statistic. Box-plots were made with the “ggplot2” R package. Drug dose response curves were produced with GraphPad Prism. […]


CDKN2A Copy Number Loss Is an Independent Prognostic Factor in HPV Negative Head and Neck Squamous Cell Carcinoma

PMCID: 5893829
PMID: 29670856
DOI: 10.3389/fonc.2018.00095
call_split See protocol

[…] were performed using a two-sided significance level of 0.05. R version 3.4.1 and the following R packages were used to perform all data visualization and statistical analyses: “ggplot2,” “survival,” “survminer,” “interval,” and “mice” (–). […]


Multi omics integration for neuroblastoma clinical endpoint prediction

Biol Direct
PMCID: 5907722
PMID: 29615097
DOI: 10.1186/s13062-018-0207-8

[…] ikit-Learn []. The autoencoder network is implemented in Keras (v. 2.1.3) []. Cox regression and survival analyses were performed in the R statistical environment (v. 3.3.3) [] using the survival and survminer libraries. Plots were produced using the ggplot2 R package. The DAP and INF were run on a 32-core Intel Xeon Linux workstation. DL computations were run on a Microsoft Azure platform with 2x […]

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survminer review

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