SVDetect pipeline

SVDetect specifications

Information


Unique identifier OMICS_00324
Name SVDetect
Software type Package/Module
Interface Command line interface
Restrictions to use None
Biological technology Illumina, Life Technologies
Operating system Unix/Linux
Programming languages Perl
License GNU General Public License version 3.0
Computer skills Advanced
Version 0.8b
Stability Stable
Maintained Yes

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Maintainer


  • person_outline SVDetect Team <>

Publication for SVDetect

SVDetect citation

2017
PMCID: 5225008

[…] reads to the human reference genome grch37/hg19 using burrows-wheeler aligner (bwa)-mem with default parameters [28]. reads not aligning uniquely as well as pcr duplicates were not analysed further. svdetect was then used to identify potential translocations, inversions and large deletions/insertions from discordant paired-end data [29] aligning on different chromosomes, with unexpected strand […]

SVDetect institution(s)
Institut Curie, Paris, France; INSERM, U900, Paris, France; Mines ParisTech, Fontainebleau, France; INSERM, U380, Paris, France; CNRS, UMR3244, Université Pierre et Marie Curie, Paris, France
SVDetect funding source(s)
Supported by ‘Projet Incitatif Collaboratif Bioinformatique et Biostatistiques’ of the Institut Curie; Ligue Nationale Contre le Cancer; Institut National du Cancer.

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