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SVM2CRM

Detects cis-regulatory elements using svm implemented in LiblineaR. This function require as input a bed file in format chr, start, end, signalNorm. The genomic coordinates must be sort. The data should be normalized using others methods. For example, the ChIP-seq data should be partitioned in 100bp and then normalize by the library size.

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SVM2CRM classification

SVM2CRM specifications

Software type:
Package/Module
Restrictions to use:
None
Programming languages:
R
Computer skills:
Advanced
Stability:
Stable
Maintained:
Yes
Interface:
Command line interface
Operating system:
Unix/Linux, Mac OS, Windows
License:
GNU General Public License version 2.0
Version:
1.2.0
Requirements:
LiblineaR, SVM2CRMdata

SVM2CRM distribution

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SVM2CRM support

Documentation

Maintainer

  • Guidantonio Malagoli Tagliazucchi <>

Link to literature

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