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chevron_left Sequence-based B-cell epitope prediction chevron_right
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SVMTriP specifications

Information


Unique identifier OMICS_04202
Name SVMTriP
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Publication for SVMTriP

SVMTriP in publications

 (14)
PMCID: 5862889
PMID: 29563531
DOI: 10.1038/s41598-018-23029-7

[…] were taken from orthomcl results., sequences of immunoreactive proteins were searched for potential epitopes using 15 predictive approaches: aap, bcpred, bepipred, cbtope, cobepro, fbcpred, igpred, svmtrip, as well as bcepred based on seven amino acid physico-chemical scales, hydrophilicity, flexibility, accessibility, turns, antigenic propensity, exposed residues and polarity. these results […]

PMCID: 5763123
PMID: 29445754
DOI: 10.1155/2017/2680160

[…] properties, such as those given by different propensity scales. relevant examples of b-cell epitope prediction methods based on ml include bepipred [], abcpred [], lbtope [], bcpreds [], and svmtrip []. datasets, training features, and algorithms used for developing these methods differ. bepipred is based on random forests trained on b-cell epitopes obtained from 3d-structures […]

PMCID: 5799878
PMID: 29260567
DOI: 10.1021/acs.jproteome.7b00732

[…] way either known or potential interactors may relate to each other. the potential of the most abundant proteins for use as biomarkers is assessed using the immunogenic epitope prediction algorithm svmtrip., b. cereus atcc 14579 was grown in tryptic soy broth medium at 30 °c. a δcote knockout mutant strain previously described by bressuire-isoard et al. was grown in tryptic soy broth […]

PMCID: 5491638
PMID: 28713776
DOI: 10.3389/fcimb.2017.00289

[…] with a luminescent image analyzer. quantification of western blot was performed by using imagej software (https://imagej.nih.gov/ij/), and results were expressed in terms of relative density., svmtrip tool was used to predict the antigenic epitopes of rv0774c protein. svmtrip achieves a sensitivity of 80.1% and a precision of 55.2% with a five-fold cross-validation. the output provides […]

PMCID: 5402540
PMID: 28484468
DOI: 10.3389/fimmu.2017.00478

[…] at tsinghua university. ghost-x4 cell is a kind gift from dr. zhiwei wu at nanjing university., the antigenic region of ccr5 was predicted by three methods and the corresponding online servers, svmtrip (), fbcpred (), and pap ()., three 8-week-old female balb/c mice were first injected with 100 μg of c17-klh in complete freund’s adjuvant (cfa) (pierce, rockford, il, usa) […]


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SVMTriP institution(s)
School of Biological Sciences, Center for Plant Science and Innovation, University of Nebraska, Lincoln, NE, USA

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