SVS protocols

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description
SVS computational protocol

SVS specifications

Information


Unique identifier OMICS_19321
Name SVS
Alternative name SNP and Variation Suite
Software type Application/Script
Interface Graphical user interface
Restrictions to use License purchase required
Operating system Unix/Linux
Computer skills Medium
Stability Stable
Maintained Yes

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Additional information


http://goldenhelix.com/products/SNP_Variation/index.html

SVS IN pipeline

2013
PMCID: 3591355
PMID: 23505534
DOI: 10.1371/journal.pone.0058552

[…] component analysis (pca), a widely used method for identifying and visualizing patterns of population structure [26]. it was carried out using the genotypic principal components analysis module of snp and variation suite v.7.4.0. to obtain non-overestimated eigenvectors [27], we first ran the software using an outlier removal procedure, in which individuals with values that were greater […]

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