SW#db statistics

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Citations per year

Number of citations per year for the bioinformatics software tool SW#db
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Tool usage distribution map

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Associated diseases

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SW#db specifications

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Unique identifier OMICS_12720
Name SW#db
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Windows
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


No version available

Maintainer


  • person_outline Mile Šikić

Publication for SW#db

SW#db citation

library_books

GPU Acceleration of Sequence Homology Searches with Database Subsequence Clustering

2016
PLoS One
PMCID: 4970815
PMID: 27482905
DOI: 10.1371/journal.pone.0157338

[…] h as BLAST. GPU accelerated Smith-Waterman algorithms [–] and seed-and-extend algorithms for DNA sequences [, ] were several times faster than those of implementation for CPU with multiple CPU cores. SW#db [] is one of the GPU-based Smith-Waterman algorithms, and showed that when it is based on 1 GPU, it works 4- to 5-fold faster than does SSEARCH [], which is a CPU-based Smith-Waterman algorithm, […]


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SW#db institution(s)
University of Zagreb, Faculty of Electrical Engineering and Computing, Zagreb, Croatia
SW#db funding source(s)
Croatian Science Foundation under the project no. O-1673-2014

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