swDMR protocols

swDMR computational protocol

swDMR specifications


Unique identifier OMICS_00625
Name swDMR
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages Perl, R
License GNU General Public License version 2.0
Computer skills Advanced
Stability Stable
Maintained Yes


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swDMR IN pipeline

PMCID: 4606454
PMID: 26344546
DOI: 10.7554/eLife.06671.030

[…] v0.14.3 (krueger and andrews, 2011) with default parameters; the pcr duplicates were removed, and the methylation information was obtained with bismark with cutoff 3. the dmrs were obtained using swdmr (wang et al., 2015) with window 200, step size 100, (left 1000, right 1000), the samples were compared using the kruskal–wallis analysis of variance with p-value < 0.01. the dmrs […]

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