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Protocols

SWEET specifications

Information


Unique identifier OMICS_32672
Name SWEET
Alternative names W3-SWEET, SWEET-II
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Maintainers


  • person_outline Andreas Bohne-Lang
  • person_outline Claus-W von der Lieth

Publications for SWEET

SWEET citations

 (5)
library_books

Mindful Aging: The Effects of Regular Brief Mindfulness Practice on Electrophysiological Markers of Cognitive and Affective Processing in Older Adults

2015
PMCID: 5241348
PMID: 28163795
DOI: 10.1007/s12671-015-0482-8

[…] ange of studies indicate that mindfulness practices improve several attentional functions such as (i) the ability to sustain attention over time (Moore and Malinowski ; Pagnoni et al. ; Valentine and Sweet ), (ii) the allocation of attentional resources (Slagter et al. ; Slagter et al. ), and (iii) attentional control functions, in particular the ability to withhold or inhibit automatic responses […]

library_books

Deciphering the Glycan Preference of Bacterial Lectins by Glycan Array and Molecular Docking with Validation by Microcalorimetry and Crystallography

2013
PLoS One
PMCID: 3747263
PMID: 23976992
DOI: 10.1371/journal.pone.0071149

[…] ell defined conformations , . These are available in the BIOLIGO database (http://bioligo.cermav.cnrs.fr/) that contains three-dimensional structures of bioactive oligosaccharides generated using the SWEET-II and POLYS builders altogether with Shape a conformational search engine based on a genetic algorithm coupled to the MM3 force-field . Molecular docking studies of fucose and fucose-containi […]

library_books

Drug Off Target Effects Predicted Using Structural Analysis in the Context of a Metabolic Network Model

2010
PLoS Comput Biol
PMCID: 2950675
PMID: 20957118
DOI: 10.1371/journal.pcbi.1000938

[…] web applet (http://www.chemaxon.com/marvin/sketch/index.jsp). The three-dimensional structures for glycolipids were derived from their KEGG glycan structures (http://www.genome.jp/kegg/glycan/) using SWEET-II (http://www.glycosciences.de/spec/sweet2/doc/index.php).Protein structures were pre-processed for docking using AutoDockTools (ADT) version 1.5.2 by adding polar hydrogen atoms, removing all […]

library_books

Bioinformatics and molecular modeling in glycobiology

2010
PMCID: 2912727
PMID: 20364395
DOI: 10.1007/s00018-010-0352-4

[…] Easy-to-use and freely available Web-based tools [, ] are available to generate an initial model of a carbohydrate 3D structure. SWEET-II [] is a frequently used carbohydrate 3D builder that is available on the GLYCOSCIENCES.de [] website, which also provides the GlyProt [] tool for in silico glycosylation of proteins derived f […]

call_split

AISMIG—an interactive server side molecule image generator

2005
Nucleic Acids Res
PMCID: 1160199
PMID: 15980568
DOI: 10.1093/nar/gki438
call_split See protocol

[…] cules generated on other servers or stored in other databases can be automatically uploaded to the AISMIG server and directly accessed for the rendering process. See the carbohydrate builder web tool Sweet II () () as an example. At the server side, a script fetches the request from the user and after checking if the file is in PDB format, a script calls the free program PyMol () to generate the m […]

Citations

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SWEET institution(s)
Deutsshes Krebsforschungszentrum, Zentrale Spektroskopie, Heidelberg, Germany; Universität Hildesheim, Institut für angewandte Sprashwissensshaft, Hildesheim, Germany

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