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chevron_left Amino acid repeat prediction Internal symmetry prediction Tandem repeat prediction Repetitive element prediction chevron_right
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Swelfe specifications

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Unique identifier OMICS_03598
Name Swelfe
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Publication for Swelfe

Swelfe citation

library_books

Tandem Repeats in Proteins: Prediction Algorithms and Biological Role

2015
Front Bioeng Biotechnol
PMCID: 4585158
PMID: 26442257
DOI: 10.3389/fbioe.2015.00143

[…] lignment program (SAP) that evaluates internal structural symmetries via a protein self-similarity matrix and employs a Fourier Transform approach to identify strong signals over the noisy background.Swelfe (Abraham et al., ) finds internal repeats by combining three abstraction levels. Swelfe quickly identifies statistically significant internal repeats in DNA sequence, in the amino acid sequence […]


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Swelfe institution(s)
UPMC Univ Paris 06, Atelier de BioInformatique, Paris, France; Institut Pasteur, Microbial Evolutionary Genomics, CNRS, URA2171, Paris, France
Swelfe funding source(s)
Grants from Region Ile-de-France; ACI IMPBIO to EvolRep; ANR-06-CIS to project PROTEUS

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