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SwifT Exact LocaL AligneR STELLAR

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Brings exact local alignments to the community at the speed of heuristic state-of-the-art tools like BLAST, BLAT, or LASTZ. STELLAR is an algorithm to compute all local alignments of a minimal length according to a clear quality definition using the established measures error rate and X-drop. Application of STELLAR is especially promising in that it uses the error rate for sensitivity control, an established criterion for read mappers.

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STELLAR forum

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STELLAR classification

STELLAR specifications

Software type:
Package/Module
Restrictions to use:
None
Programming languages:
C++
Version:
1.4.9
Maintained:
Yes
Interface:
Command line interface
Operating system:
Unix/Linux, Mac OS, Windows
Computer skills:
Advanced
Stability:
Stable

STELLAR distribution

versioning

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STELLAR support

Maintainer

  • Birte Kehr <>

Credits

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Publications

Institution(s)

Department of Computer Science, Free University Berlin, Berlin, Germany; International Max Planck Research School for Computational Biology and Scientific Computing, Berlin, Germany

Link to literature

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