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SWISS-MODEL specifications

Information


Unique identifier OMICS_03965
Name SWISS-MODEL
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes
Wikipedia https://en.wikipedia.org/wiki/Swiss-model

Maintainer


  • person_outline SWISS-MODEL Team

Publications for SWISS-MODEL

SWISS-MODEL citations

 (1738)
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The cell wall hydrolase Pmp23 is important for assembly and stability of the division ring in Streptococcus pneumoniae

2018
Sci Rep
PMCID: 5954120
PMID: 29765094
DOI: 10.1038/s41598-018-25882-y
call_split See protocol

[…] The Swiss Model server (http://swissmodel.expasy.org/) was used to generate models of the soluble domain of Pmp23 based on the structures of CwlT from C. difficile and S. aureus (PDB codes 4HPE and 4FDY, […]

library_books

First comprehensive analysis of lysine acetylation in Alvinocaris longirostris from the deep sea hydrothermal vents

2018
BMC Genomics
PMCID: 5946511
PMID: 29747590
DOI: 10.1186/s12864-018-4745-3

[…] ich were described as hemocyanin (AlHc) and hemocyanin subunit 1 (AlHc1). Secondary structures of the two proteins were predicted by NetSurfP []. The presumed tertiary structure was established using SWISS-MODEL prediction algorithm (http://swissmodel.expasy.org/) and displayed by DeepView/Swiss-Pdb Viewer version 4.0.2. The two hemocyanin sequences were aligned with those downloaded from GenBank […]

library_books

Comprehensive analyses of the BES1 gene family in Brassica napus and examination of their evolutionary pattern in representative species

2018
BMC Genomics
PMCID: 5944053
PMID: 29743014
DOI: 10.1186/s12864-018-4744-4

[…] amino acids were removed for further analysis. MEME (version 4.12.0) was used to search for conserved motifs, and the number of motifs was set as 10 []. The protein structure was predicted using the Swiss-model database []. The interaction networks of A. thaliana BES1 genes were constructed using the STRING database (http://string-db.org). The RNA-seq data was used to analyse BES1 gene expression […]

library_books

Computational analysis of the receptor binding specificity of novel influenza A/H7N9 viruses

2018
BMC Genomics
PMCID: 5954268
PMID: 29764421
DOI: 10.1186/s12864-018-4461-z

[…] We used SWISS-MODEL for the homology modelling, constructing an atomic-resolution model of the target HA protein from its amino acid sequence [, ]. First, the primary sequence of the HA protein from the TW17 […]

library_books

Functional insights into the interplay between DNA interaction and metal coordination in ferric uptake regulators

2018
Sci Rep
PMCID: 5940780
PMID: 29739988
DOI: 10.1038/s41598-018-25157-6

[…] e regions involved in the interaction between holo-CjFur and the katA promoter region. We first modeled the holo-CjFur structure using the Helicobacter pylori Fur (2XIG) structure as the template and SWISS_MODEL software. Calculation of the holo-CjFur surface electrostatic potential (Fig. ) shows that several positively charged residues (Fig. ), including R20, K25, K28, R30, Y68 and R69, cluster i […]

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Directed evolution of the bacterial endo β 1,4 glucanase from Streptomyces sp. G12 towards improved catalysts for lignocellulose conversion

2018
PMCID: 5935602
PMID: 29728880
DOI: 10.1186/s13568-018-0602-7
call_split See protocol

[…] The three dimensional structures of the two domains of the CelStrep enzyme were determined by submitting the translated celstrep gene to SWISS-MODEL (http://expasy.org/). The crystal structure of the CelB2 1,4-β-glucanase from Streptomyces lividans PDB ID: 2NLR (sequence identity 84%), was used as a template for the molecular model of […]

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SWISS-MODEL institution(s)
Biozentrum, University of Basel, Basel, Switzerland SIB Swiss Institute of Bioinformatics, Basel, Switzerland

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