SWISS-MODEL protocols

SWISS-MODEL specifications

Information


Unique identifier OMICS_03965
Name SWISS-MODEL
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes
Wikipedia https://en.wikipedia.org/wiki/Swiss-model

Maintainer


  • person_outline SWISS-MODEL Team <>

Publications for SWISS-MODEL

SWISS-MODEL IN pipelines

 (29)
2018
PMCID: 5764898
PMID: 29327267
DOI: 10.1186/s13568-017-0533-8

[…] (http://disulfind.dsi.unifi.it/) was used to predict cysteine disulfide bonding state and connectivity of the putative protein. and the tertiary structure of bdpho was predicted by online software swiss-model (https://swissmodel.expasy.org/) (biasini et al. 2014)., the phylogenetic analysis on the basis of amino acid sequences was performed with mega 6.0 (tamura et al. 2011) using the maximum […]

2018
PMCID: 5894237
PMID: 29636069
DOI: 10.1186/s12977-018-0414-5

[…] the brillianstar-lt assay system (toyo-b-net) and the 2030 arvo x multilabel counter instrument (perkinelmer) according to the manufacturers’ procedures., homology modeling was performed using the swiss-model server [53–56]. after blast searches [57] of the bobcat and puma a3z3 amino acid sequences against protein data bank sequence entries (http://www.rcsb.org/pdb/), the crystal structure […]

2017
PMCID: 5239777
PMID: 28144240
DOI: 10.3389/fimmu.2016.00698

[…] the las af sp5 software (leica)., we based on the kir2dl1 x-ray structure (22) (pdb accession code: 1nkr) to predict the structures of the d2 ig-like domains of kir2dl5a*001 and *005, using the swiss-model automated protein structure homology-modeling system (23), accessible via the expasy web server.1 quality of each model was assessed with the qmean z-score (24), which describes […]

2017
PMCID: 5356311
PMID: 28331543
DOI: 10.1186/s13068-017-0744-x

[…] by atg:biosynthetics (merzhausen, germany) after optimizing the codon usage for high expression in e. coli using optimizer [56]., molecular models of the predicted proteins were obtained at the swiss-model automated protein homology modeling server [57] using related crystal structures, selected using the gmqe parameter, as templates (pdb entries 4bm1, 3fjw, and 1qpa corresponding […]

2017
PMCID: 5375646
PMID: 28435861
DOI: 10.1126/sciadv.1601778

[…] the ability of ligands to protect receptors from trypsin digestion was assessed at 10−3 to 10−5 m for paraestrol a and 10−6 to 10−8 m for estradiol., homology modeling was carried out using swiss-model (78). both receptors ancsr_ac and ancsr_d were modeled on the basis of (i) the crystal structure of erα lbd in complex with 17β-estradiol (pdb code, 1ere) and (ii) the crystal structure […]

SWISS-MODEL institution(s)
Biozentrum, University of Basel, Basel, Switzerland SIB Swiss Institute of Bioinformatics, Basel, Switzerland

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