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Protocols
SWISS-MODEL specifications
Information
Unique identifier | OMICS_03965 |
---|---|
Name | SWISS-MODEL |
Interface | Web user interface |
Restrictions to use | None |
Computer skills | Basic |
Stability | Stable |
Maintained | Yes |
Wikipedia | https://en.wikipedia.org/wiki/Swiss-model |
Maintainer
- person_outline SWISS-MODEL Team
Publications for SWISS-MODEL
SWISS-MODEL: modelling protein tertiary and quaternary structure using evolutionary information
The SWISS-MODEL workspace: a web-based environment for protein structure homology modelling.
SWISS-MODEL citations
(1738)The cell wall hydrolase Pmp23 is important for assembly and stability of the division ring in Streptococcus pneumoniae
[…] The Swiss Model server (http://swissmodel.expasy.org/) was used to generate models of the soluble domain of Pmp23 based on the structures of CwlT from C. difficile and S. aureus (PDB codes 4HPE and 4FDY, […]
First comprehensive analysis of lysine acetylation in Alvinocaris longirostris from the deep sea hydrothermal vents
[…] ich were described as hemocyanin (AlHc) and hemocyanin subunit 1 (AlHc1). Secondary structures of the two proteins were predicted by NetSurfP []. The presumed tertiary structure was established using SWISS-MODEL prediction algorithm (http://swissmodel.expasy.org/) and displayed by DeepView/Swiss-Pdb Viewer version 4.0.2. The two hemocyanin sequences were aligned with those downloaded from GenBank […]
Comprehensive analyses of the BES1 gene family in Brassica napus and examination of their evolutionary pattern in representative species
[…] amino acids were removed for further analysis. MEME (version 4.12.0) was used to search for conserved motifs, and the number of motifs was set as 10 []. The protein structure was predicted using the Swiss-model database []. The interaction networks of A. thaliana BES1 genes were constructed using the STRING database (http://string-db.org). The RNA-seq data was used to analyse BES1 gene expression […]
Computational analysis of the receptor binding specificity of novel influenza A/H7N9 viruses
[…] We used SWISS-MODEL for the homology modelling, constructing an atomic-resolution model of the target HA protein from its amino acid sequence [, ]. First, the primary sequence of the HA protein from the TW17 […]
Functional insights into the interplay between DNA interaction and metal coordination in ferric uptake regulators
[…] e regions involved in the interaction between holo-CjFur and the katA promoter region. We first modeled the holo-CjFur structure using the Helicobacter pylori Fur (2XIG) structure as the template and SWISS_MODEL software. Calculation of the holo-CjFur surface electrostatic potential (Fig. ) shows that several positively charged residues (Fig. ), including R20, K25, K28, R30, Y68 and R69, cluster i […]
Directed evolution of the bacterial endo β 1,4 glucanase from Streptomyces sp. G12 towards improved catalysts for lignocellulose conversion
[…] The three dimensional structures of the two domains of the CelStrep enzyme were determined by submitting the translated celstrep gene to SWISS-MODEL (http://expasy.org/). The crystal structure of the CelB2 1,4-β-glucanase from Streptomyces lividans PDB ID: 2NLR (sequence identity 84%), was used as a template for the molecular model of […]
Citations
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