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SwissTargetPrediction specifications

Information


Unique identifier OMICS_05429
Name SwissTargetPrediction
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline David Gfeller <>

Publications for SwissTargetPrediction

SwissTargetPrediction in publications

 (11)
PMCID: 5896251
PMID: 29785196
DOI: 10.1155/2018/6813467

[…] similar molecules are likely to have equivalent properties []. for this, the chemical structure of strychnobiflavone was retrieved from the pubchem database [] and uploaded to the targethunter [], swisstargetprediction [], similarity ensemble approach (sea) [], and pass online [] servers. threshold values were selected by default parameters, and molecular targets were considered as possible […]

PMCID: 5761900
PMID: 29320554
DOI: 10.1371/journal.pone.0191006

[…] was filtered to remove duplicate entries. human proteins targeted by the phytochemicals were predicted from stitch 5.0 (search tool for interactions of chemicals and proteins) [], bindingdb [], swisstargetprediction [] and pcidb., the protein-chemical interaction reported in stitch comes from the manually curated datasets including drugbank [] glida [], matador [], ttd (therapeutic target […]

PMCID: 5499275
PMID: 28775867
DOI: 10.1107/S2056989017008301

[…] = 0.90997, homo = −9.265 ev, lumo = −1.337 ev and energy gap = 7.928 ev (macrae et al., 2008; stewart, 2013, 2016). the biological target prediction for the title compound was calculated with the swisstargetprediction webserver based on the bioisosteric similarity to the isatin entity (gfeller et al., 2013, 2014). as result of this screening, the title compound showed a promising theoretical […]

PMCID: 5421137
PMID: 27848897
DOI: 10.2174/1568026617666161116143440

[…] it is natural to infer that other proteins with similar sequence or structure may also bind to the ligand. such similarity-based approach [, ] is the conceptual foundation for the software swisstargetprediction []., it is important to keep in mind that a structure determined by x-ray crystallography or by nmr represents only a snapshot of structural dynamics, and that protein structure […]

PMCID: 5471945
PMID: 28617219
DOI: 10.1186/s12859-017-1637-5

[…] is a gold standard positive set because they all resemble innate metabolites by definition. then, we compared the performance of our method to known drug-target prediction methods including swisstargetprediction [], targetnet [], and libdock algorithm of molecular docking []. after showing that our method outperforms the other drug-target prediction methods in terms of drug-enzyme […]


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SwissTargetPrediction institution(s)
Swiss Institute of Bioinformatics (SIB), Quartier Sorge, Bâtiment Génopode, Lausanne, Switzerland

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