Sybil pipeline

Sybil specifications

Information


Unique identifier OMICS_00945
Name Sybil
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline David R. Riley <>

Publications for Sybil

Sybil IN pipelines

 (2)
2017
PMCID: 5827699
PMID: 29099918
DOI: 10.1093/femspd/ftx115

[…] is known to inflate the number of small orfs in a genome, we removed all orfs <60 aa and all orfs coding for hypothetical proteins <100 aa with no ortholog in wbm (skovgaard et al.2001). using sybil (riley et al.2012) to visualize and interrogate orthologous proteins between wwb and wbm, the two genomes were found to share 779 orthologous clusters, with wwb having 101 unclustered genes […]

2015
PMCID: 4522099
PMID: 26236396
DOI: 10.1186/s13068-015-0285-0

[…] factor 1, e value cutoff 1e−3, percentage match cutoff 60% as for identification of distant homologs [57]. the orthologs clusters were further split according to the synteny detected by the sybil algorithm [58] at www.aspgd.org. sequences of genes were manually double checked by multiple sequence alignments with mafft [59] and potential errors of gene models were corrected., […]

Sybil institution(s)
Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD, USA; Department of Microbiology and Immunology, University of Maryland School of Medicine, Baltimore, MD, USA
Sybil funding source(s)
Platform for Appropriate Technology in Health (PATH) Contracts (GAT.0782-01990-COA and 003024)

Sybil reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review Sybil