SymD specifications

Information


Unique identifier OMICS_06828
Name SymD
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

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Information


Unique identifier OMICS_06828
Name SymD
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Publications for SymD

SymD in publications

 (2)
PMCID: 5537660
PMID: 28665339
DOI: 10.3390/v9070168

[…] were done with dali [], oligomerization parameters (accessible and buried surfaces, estimated dissociation energies) were analyzed with jspisa [] and local three-fold axes were identified with symd []. multiple amino acid sequences were aligned by clustal w []., crystals belonging to two different space groups (p21 and r32) were obtained for gp34(894–1289). crystals of gp34(781–1289) […]

PMCID: 5215794
PMID: 26828963
DOI: 10.1038/nsmb.3166

[…] a tm-score of 0.52, which increased to 0.78 and 0.83 when comparing only the transport and scaffold domain helices, respectively. the analysis of the symmetry axis of the repeats was performed using symd. . an initial sequence alignment of the template and the model sequences was compiled from the tm-align output. this initial alignment was refined by removing gaps within secondary structural […]


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SymD institution(s)
Laboratory of Molecular Biology, National Cancer Institute, National Institutes of Health, Bethesda, MD, USA; Office of Information Technology, National Cancer Institute, National Institutes of Health, Chinakville, MD, USA

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